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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
1
candidate regulatory elements
1
eQTL
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ChIP-seq
1
DNase-seq
1
RNA-seq
1
pCHi-C
Available data
6
bed bed3+
1
bed bed9
1
bigBed bed9
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
in vitro differentiated cells
5
primary cell
1
stem cell
Biosample term
110
monocyte
66
heart
65
stomach
61
HeLa-S3
58
kidney
52
brain
51
muscle of arm
50
lung
47
small intestine
46
CD8-positive, alpha-beta T cell
46
adrenal gland
45
H1-hESC
45
placenta
44
A549
43
large intestine
43
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
37
thymus
35
K562
35
retina
34
right lung
32
liver
31
endothelial cell
31
renal cortex interstitium
31
renal pelvis
31
right kidney
30
B cell
28
fibroblast
27
CD14-positive monocyte
27
left kidney
27
spinal cord
26
spleen
24
heart left ventricle
23
CD4-positive, alpha-beta memory T cell
23
macrophage
21
MCF-7
21
pericyte cell
20
adipose tissue
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
hepatocyte
19
keratinocyte
19
smooth muscle cell
18
pancreas
17
foreskin fibroblast
17
sigmoid colon
16
HepG2
16
T cell
16
islet of Langerhans
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
GM12878
15
H9
15
foreskin keratinocyte
15
natural killer cell
15
ovary
15
psoas muscle
14
astrocyte
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mononuclear cell
14
pancreatic ductal cell
14
tibial nerve
14
transverse colon
14
trophoblast cell
13
body of pancreas
13
fibroblast of cardiac tissue
13
osteoblast
13
thyroid gland
13
upper lobe of left lung
12
CD4-positive, alpha-beta T cell
12
EndoC_BH1
12
coronary artery
12
fibroblast of lung
12
heart right ventricle
12
layer of hippocampus
12
mammary epithelial cell
12
muscle of trunk
12
neuroblastoma cell
12
pancreatic beta cell
12
testis
11
T-helper 1 cell
11
caudate nucleus
11
chorionic villus
11
endothelial cell of hepatic sinusoid
11
excitatory neuron
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
gastric cancer cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
prostate gland
10
right renal pelvis
10
skeletal muscle myoblast
10
skeletal muscle tissue
9
T-helper 2 cell
9
cardiac muscle cell
9
epithelial cell of prostate
9
erythroblast
9
fibroblast of dermis
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
pancreatic delta cell
9
skeletal muscle satellite cell
9
tibial artery
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
IMR-90
8
breast epithelium
8
choroid plexus epithelial cell
8
fibroblast cell line
8
left cardiac atrium
8
mammary gland epithelial cell
8
pituitary stalk
8
right atrium auricular region
8
temporal lobe
8
trophoblast
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HAP-1
7
HL-60
7
HT-29
7
Jurkat
7
T-helper 17 cell
7
aorta
7
colonic mucosa
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
kidney tubule cell
7
lower leg skin
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neutrophil
7
omental fat pad
7
retinal pigment epithelial cell
7
skin fibroblast
7
substantia nigra
7
thoracic aorta
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
Ammon's horn
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
GM12875
6
GM19238
6
GM19239
6
GM23248
6
HUES8
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
ascending aorta
6
cingulate gyrus
6
colon epithelial cell
6
diffuse intrinsic pontine glioma
6
endometrium adenocarcinoma
6
esophagus
eye
6
fibroblast of pulmonary artery
6
immortal human breast epithelial cell line cell
6
parathyroid adenoma
6
tongue
5
cardiac fibroblast
5
CD4-positive helper T cell
5
Chondroid Chordoma
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM18507
5
H7-hESC
5
HCT-116 cell
5
HCT116
5
HUES6
5
HuH-7
5
KARPAS-422 cell
5
LHCN-M2
5
LoVo cell
5
MG63
5
OCI-LY7
Organ
6
connective tissue
Life stage
1
adult
1
unknown
Date released
2
February, 2024
1
February, 2021
1
March, 2020
1
May, 2022
1
October, 2022
Software used
2
macs
1
eigenmt
1
encode-ccres
1
nospecificsoft_customcode
1
qTLtools
1
rasqual
Lab
3
AMP-T2D consortium
3
Stephen Parker, UMich
Project
6
AMP
RFA
3
AMP
3
AMP2
biosample_type!
in vitro differentiated cells
biosample_term_name!
eye
Showing 6 of 6 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP