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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
1
chromatin state
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ChIP-seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
5
bed bed3+
1
bed bed9
1
bigBed bed9
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
in vitro differentiated cells
6
primary cell
1
stem cell
Biosample term
131
monocyte
72
heart
66
kidney
65
stomach
62
HeLa-S3
60
brain
59
A549
54
H1-hESC
51
lung
50
muscle of arm
49
small intestine
48
adrenal gland
48
placenta
45
islet of Langerhans
44
muscle of leg
43
CD8-positive, alpha-beta T cell
43
liver
42
large intestine
40
K562
40
common myeloid progenitor, CD34-positive
40
endothelial cell
39
left lung
39
muscle of back
39
thymus
37
retina
34
B cell
34
right lung
33
hepatocyte
32
macrophage
32
right kidney
30
adipose tissue
30
fibroblast
30
renal pelvis
29
renal cortex interstitium
28
heart left ventricle
28
spinal cord
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
left kidney
26
regulatory T cell
25
spleen
23
EndoC_BH1
22
MCF-7
22
epithelial cell of proximal tubule
22
pancreatic ductal cell
22
pericyte cell
22
tibial nerve
21
CD8-positive, alpha-beta memory T cell
21
T cell
20
T-helper 1 cell
20
body of pancreas
20
breast cancer cell
20
caudate nucleus
20
glomerular endothelial cell
20
keratinocyte
20
pigmented layer of retina
20
smooth muscle cell
19
coronary artery
19
mononuclear cell
19
pancreas
19
subcutaneous adipose tissue
18
HFFc6
18
T-helper 17 cell
18
natural killer cell
18
pancreatic beta cell
18
right atrium auricular region
17
pancreatic acinar cell
17
pancreatic alpha cell
17
psoas muscle
17
sigmoid colon
17
tibial artery
16
HepG2
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
heart right ventricle
16
osteoblast
16
ovary
15
GM12878
15
endothelial cell of umbilical vein
15
frontal cortex
15
pancreatic delta cell
15
substantia nigra
15
thyroid gland
15
trophoblast cell
14
T-helper 2 cell
14
ascending aorta
13
cerebellum
13
fibroblast of lung
13
foreskin fibroblast
13
gastrocnemius medialis
13
neutrophil
13
omental fat pad
13
skeletal muscle myoblast
13
testis
13
transverse colon
12
endocrine pancreas
12
layer of hippocampus
12
lymphoblastoid cell line
12
mammary gland epithelial cell
12
muscle of trunk
12
neuroblastoma cell
12
putamen
12
skeletal muscle satellite cell
12
skeletal muscle tissue
11
Ammon's horn
11
aorta
11
bronchial epithelial cell
11
chorionic villus
11
erythroblast
11
excitatory neuron
11
fibroblast of dermis
11
foreskin keratinocyte
11
glomerular visceral epithelial cell
11
prostate gland
10
Peyer's patch
10
Rhabdomyosarcoma
10
gastric cancer cell
10
hepatic stellate cell
10
left cardiac atrium
10
lymphocyte
10
pancreatic stellate cell
10
upper lobe of left lung
9
H9
9
kidney tubule cell
9
liposarcoma
9
temporal lobe
9
trophoblast
8
22Rv1
8
B-lymphoblastoid cell line
8
NAMALWA cell
8
cardiac muscle cell
8
choroid plexus epithelial cell
8
colon epithelial cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
mammary epithelial cell
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
skin fibroblast
8
thoracic aorta
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD4-positive, alpha-beta T cell
7
Caco-2 cell
7
GM12865
7
IMR-90
7
SK-N-SH
7
WERI-Rb-1
7
amygdala
7
breast epithelium
7
chorion membrane
7
cingulate gyrus
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
epithelial cell of prostate
7
esophagus
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
limb
7
mature neutrophil
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
GM06990
6
HT-29
6
HUES8
6
Jurkat
6
KARPAS-422 cell
6
LoVo cell
6
OCI-LY7
6
SK-N-DZ
6
T47D
6
anterior cingulate cortex
6
colonic mucosa
6
diffuse intrinsic pontine glioma
6
fibroblast of villous mesenchyme
6
globus pallidus
6
hypothalamus
6
iPSC derived cell line
6
induced pluripotent stem cell
6
kidney glomerular epithelial cell
6
left renal cortex interstitium
6
left renal pelvis
6
midbrain
6
mucosa of rectum
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neurosphere
6
nucleus accumbens
6
occipital lobe
6
plasma cell
6
retinal pigment epithelial cell
Organ
7
connective tissue
Life stage
1
adult
1
unknown
Date released
3
February, 2024
1
March, 2020
1
May, 2022
1
October, 2019
1
October, 2022
Software used
2
macs
1
chromhmm
1
deeptools
1
eigenmt
encode-ccres
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
4
AMP2
3
AMP
biosample_type!
in vitro differentiated cells
biosample_term_name!
eye
software_used.software.name!
encode-ccres
Showing 7 of 7 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP