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Schema
Citing CMDGA
Clear Filters
Annotation type
1
caQTL
1
candidate regulatory elements
1
chromatin state
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
2
ChIP-seq
1
DNase-seq
1
RNA-seq
1
pCHi-C
1
snATAC-seq
1
snRNA-seq
Available data
4
bed bed3+
1
bed bed9
1
bigBed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
in vitro differentiated cells
5
primary cell
1
stem cell
Biosample term
83
heart
82
stomach
68
kidney
68
lung
67
brain
66
muscle of arm
64
HeLa-S3
62
small intestine
61
adrenal gland
59
A549
56
muscle of leg
56
placenta
54
common myeloid progenitor, CD34-positive
54
large intestine
54
muscle of back
52
left lung
51
H1-hESC
45
thymus
44
right lung
42
liver
42
right kidney
39
renal cortex interstitium
38
K562
38
islet of Langerhans
38
renal pelvis
37
B cell
36
left kidney
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
spinal cord
30
heart left ventricle
30
spleen
29
adipose tissue
26
monocyte
24
body of pancreas
23
regulatory T cell
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
22
epithelial cell of proximal tubule
22
sigmoid colon
22
tibial nerve
21
MCF-7
21
T-helper 17 cell
21
endothelial cell
20
hepatocyte
19
HFFc6
19
caudate nucleus
19
foreskin keratinocyte
19
glomerular endothelial cell
19
mononuclear cell
19
natural killer cell
19
ovary
19
psoas muscle
18
CD8-positive, alpha-beta T cell
18
subcutaneous adipose tissue
17
T cell
17
T-helper 2 cell
17
coronary artery
17
endothelial cell of umbilical vein
17
heart right ventricle
17
macrophage
17
muscle of trunk
17
substantia nigra
17
thyroid gland
17
transverse colon
16
H9
16
chorionic villus
16
fibroblast of lung
16
gastrocnemius medialis
16
omental fat pad
16
right atrium auricular region
16
trophoblast cell
15
ascending aorta
15
retina
15
skeletal muscle tissue
15
tibial artery
14
CD4-positive, alpha-beta T cell
14
endocrine pancreas
pancreas
14
testis
13
EndoC_BH1
13
GM12878
13
Peyer's patch
13
aorta
13
cerebellum
13
foreskin fibroblast
13
frontal cortex
13
layer of hippocampus
13
neurosphere
13
neutrophil
12
fibroblast
12
fibroblast of dermis
12
left renal cortex interstitium
12
temporal lobe
12
upper lobe of left lung
11
mammary gland epithelial cell
11
pericyte cell
11
putamen
11
skeletal muscle myoblast
10
Ammon's horn
10
SK-N-SH
10
fibroblast of cardiac tissue
10
keratinocyte
10
left cardiac atrium
10
right renal cortex interstitium
10
smooth muscle cell
9
HepG2
9
angular gyrus
9
breast epithelium
9
colonic mucosa
9
dermis blood vessel endothelial cell
9
esophagus
9
esophagus squamous epithelium
9
left renal pelvis
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
pancreatic beta cell
9
pancreatic delta cell
9
parathyroid adenoma
9
right renal pelvis
9
thoracic aorta
9
vagina
8
22Rv1
8
SK-N-DZ
8
astrocyte
8
bronchial epithelial cell
8
cingulate gyrus
8
duodenal mucosa
8
epithelial cell of prostate
8
esophagus muscularis mucosa
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
lymphocyte
8
myoepithelial cell of mammary gland
8
naive T cell
8
pancreatic acinar cell
8
pancreatic ductal cell
8
pituitary stalk
8
prostate gland
8
skeletal muscle satellite cell
8
tongue
7
LNCaP clone FGC
7
T47D
7
WI38
7
chorion membrane
7
endometrium adenocarcinoma
7
eye
7
glomerular visceral epithelial cell
7
kidney tubule cell
7
limb
7
pancreatic alpha cell
7
right lobe of liver
7
stomach smooth muscle
7
trophoblast
6
Brodmann (1909) area 46
6
HCT116
6
HEK293
6
IMR-90
6
NAMALWA cell
6
T-cell
6
alternatively activated macrophage
6
amygdala
6
anterior cingulate cortex
6
fibroblast of breast
6
induced pluripotent stem cell
6
kidney glomerular epithelial cell
6
lymphoblastoid cell line
6
mucosa of rectum
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
osteoblast
6
uterus
5
A673
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
Organ
6
connective tissue
Life stage
2
adult
Date released
2
February, 2024
1
February, 2021
1
March, 2020
1
October, 2019
1
October, 2022
Software used
macs
1
chromhmm
1
deeptools
1
eigenmt
1
encode-ccres
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
3
Stephen Parker, UMich
Project
6
AMP
RFA
3
AMP
3
AMP2
biosample_type!
in vitro differentiated cells
biosample_term_name!
pancreas
software_used.software.name!
macs
Showing 6 of 6 results
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Download
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP