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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
caQTL
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
2
ChIP-seq
2
snATAC-seq
1
DNase-seq
1
pCHi-C
Available data
4
bed bed3+
1
bed bed9
1
bigBed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
in vitro differentiated cells
4
primary cell
1
stem cell
Biosample term
131
monocyte
90
heart
86
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
50
CD8-positive, alpha-beta T cell
48
liver
48
thymus
45
right lung
44
islet of Langerhans
42
right kidney
40
renal cortex interstitium
40
renal pelvis
40
retina
39
B cell
36
left kidney
35
spinal cord
34
endothelial cell
34
heart left ventricle
34
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
29
macrophage
26
MCF-7
25
K562
25
tibial nerve
24
body of pancreas
23
EndoC_BH1
23
epithelial cell of proximal tubule
23
fibroblast
23
regulatory T cell
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
hepatocyte
22
pancreas
22
pericyte cell
21
glomerular endothelial cell
21
natural killer cell
20
breast cancer cell
20
coronary artery
20
keratinocyte
20
mononuclear cell
20
ovary
20
psoas muscle
20
subcutaneous adipose tissue
19
T cell
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
foreskin keratinocyte
19
heart right ventricle
pigmented layer of retina
19
right atrium auricular region
18
T-helper 1 cell
18
gastrocnemius medialis
18
pancreatic ductal cell
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
18
trophoblast cell
17
H1-hESC
17
HepG2
17
T-helper 17 cell
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
testis
16
T-helper 2 cell
16
chorionic villus
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
layer of hippocampus
16
pancreatic alpha cell
16
pancreatic beta cell
16
skeletal muscle tissue
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
ascending aorta
15
astrocyte
15
cerebellum
15
frontal cortex
15
neutrophil
15
skeletal muscle myoblast
15
smooth muscle cell
14
endocrine pancreas
14
pancreatic acinar cell
14
prostate gland
14
putamen
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
neurosphere
13
pancreatic delta cell
13
temporal lobe
12
Ammon's horn
12
HeLa-S3
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
excitatory neuron
11
glomerular visceral epithelial cell
11
left renal pelvis
11
mammary gland epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
11
skeletal muscle satellite cell
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
hepatic stellate cell
10
kidney tubule cell
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
GM12878
9
H9
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cardiac muscle cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
retinal pigment epithelial cell
8
skin fibroblast
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
kidney glomerular epithelial cell
7
mature neutrophil
7
renal cortical epithelial cell
7
right lobe of liver
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
HAP-1
6
Jurkat
6
KARPAS-422 cell
6
LNCAP
6
LoVo cell
6
MM.1S
Organ
5
connective tissue
Life stage
2
adult
1
unknown
Date released
February, 2024
1
February, 2021
1
March, 2020
1
May, 2022
1
October, 2019
1
October, 2022
Software used
1
chromhmm
1
eigenmt
1
encode-ccres
1
macs
1
nospecificsoft_customcode
1
rasqual
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
4
AMP
1
AMP2
biosample_type!
in vitro differentiated cells
biosample_term_name!
pigmented layer of retina
month_released!
February, 2024
Showing 5 of 5 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP