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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
1
candidate regulatory elements
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ChIP-seq
1
DNase-seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
6
bed bed3+
bed bed9
1
bigBed bed9
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
in vitro differentiated cells
6
primary cell
1
stem cell
Biosample term
131
monocyte
69
heart
67
stomach
65
kidney
61
HeLa-S3
55
brain
53
H1-hESC
52
lung
51
muscle of arm
50
CD8-positive, alpha-beta T cell
48
adrenal gland
48
small intestine
46
placenta
45
islet of Langerhans
44
A549
43
large intestine
43
muscle of leg
42
liver
41
common myeloid progenitor, CD34-positive
41
muscle of back
40
endothelial cell
39
left lung
37
retina
37
thymus
35
K562
34
right lung
32
B cell
32
hepatocyte
32
macrophage
32
right kidney
renal cortex interstitium
31
renal pelvis
30
fibroblast
28
spinal cord
28
spleen
27
CD14-positive monocyte
27
left kidney
26
heart left ventricle
25
adipose tissue
25
regulatory T cell
23
CD4-positive, alpha-beta memory T cell
23
EndoC_BH1
22
epithelial cell of proximal tubule
22
pancreatic ductal cell
21
MCF-7
21
pericyte cell
21
subcutaneous adipose tissue
21
tibial nerve
20
body of pancreas
20
breast cancer cell
20
glomerular endothelial cell
20
pigmented layer of retina
20
smooth muscle cell
19
T-helper 1 cell
19
caudate nucleus
19
keratinocyte
19
pancreas
18
HFFc6
18
T-helper 17 cell
18
pancreatic beta cell
17
T cell
17
coronary artery
17
foreskin fibroblast
17
natural killer cell
17
ovary
17
pancreatic acinar cell
17
pancreatic alpha cell
17
right atrium auricular region
17
sigmoid colon
16
HepG2
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
osteoblast
16
substantia nigra
15
CD4-positive, alpha-beta T cell
15
CD8-positive, alpha-beta memory T cell
15
GM12878
15
endothelial cell of umbilical vein
15
foreskin keratinocyte
15
omental fat pad
15
pancreatic delta cell
15
psoas muscle
15
transverse colon
14
gastrocnemius medialis
14
mononuclear cell
14
testis
14
thyroid gland
14
tibial artery
14
trophoblast cell
13
H9
13
T-helper 2 cell
13
fibroblast of cardiac tissue
13
frontal cortex
13
heart right ventricle
13
layer of hippocampus
13
neutrophil
13
putamen
13
skeletal muscle tissue
13
upper lobe of left lung
12
ascending aorta
12
cerebellum
12
fibroblast of lung
12
lymphoblastoid cell line
12
mammary epithelial cell
12
muscle of trunk
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
prostate gland
12
skeletal muscle myoblast
11
Ammon's horn
11
chorionic villus
11
erythroblast
11
excitatory neuron
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
left renal cortex interstitium
10
pancreatic stellate cell
10
right renal pelvis
10
skeletal muscle satellite cell
9
cardiac muscle cell
9
epithelial cell of prostate
9
fibroblast of dermis
9
left cardiac atrium
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neurosphere
8
22Rv1
8
B-lymphoblastoid cell line
8
aorta
8
breast epithelium
8
choroid plexus epithelial cell
8
esophagus
8
fibroblast cell line
8
hepatic stellate cell
8
mammary gland epithelial cell
8
pituitary stalk
8
skeletal muscle fiber
8
temporal lobe
8
trophoblast
7
GM12865
7
HEK293
7
amygdala
7
colonic mucosa
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
kidney tubule cell
7
lower leg skin
7
mature neutrophil
7
memory B cell
7
retinal pigment epithelial cell
7
skin fibroblast
7
thoracic aorta
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
GM06990
6
GM12864
6
HAP-1
6
HT-29
6
HUES8
6
IMR-90
6
Jurkat
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
anterior cingulate cortex
6
cingulate gyrus
6
colon epithelial cell
6
diffuse intrinsic pontine glioma
6
endometrium adenocarcinoma
6
eye
6
fibroblast of pulmonary artery
6
globus pallidus
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
induced pluripotent stem cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
occipital lobe
6
parathyroid adenoma
6
plasma cell
6
renal cortical epithelial cell
6
right renal cortex interstitium
6
smooth muscle cell of the coronary artery
6
tongue
6
type I muscle cell
6
uterus
Organ
7
connective tissue
Life stage
1
adult
1
unknown
Date released
3
February, 2024
1
February, 2021
1
March, 2020
1
May, 2022
1
October, 2022
Software used
2
macs
1
deeptools
1
eigenmt
1
encode-ccres
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
4
AMP2
3
AMP
biosample_type!
in vitro differentiated cells
biosample_term_name!
renal cortex interstitium
files.file_type!
bed bed9
Showing 7 of 7 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP