Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
cis-regulatory elements
Target gene links
Annotation type Category
2
ChIP-seq
1
DNase-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bed bed9
1
bigBed bed9
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
in vitro differentiated cells
3
primary cell
Biosample term
128
monocyte
70
heart
67
kidney
65
stomach
57
brain
51
lung
51
muscle of arm
46
small intestine
45
CD8-positive, alpha-beta T cell
45
adrenal gland
45
placenta
44
muscle of leg
43
A549
43
islet of Langerhans
42
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
38
liver
37
retina
34
right lung
34
thymus
32
right kidney
31
renal cortex interstitium
31
renal pelvis
30
B cell
30
hepatocyte
29
endothelial cell
28
macrophage
27
heart left ventricle
27
left kidney
27
spinal cord
25
fibroblast
25
spleen
24
regulatory T cell
23
CD4-positive, alpha-beta memory T cell
23
adipose tissue
22
EndoC_BH1
22
epithelial cell of proximal tubule
22
tibial nerve
20
breast cancer cell
20
glomerular endothelial cell
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
MCF-7
19
T-helper 1 cell
19
body of pancreas
19
pancreatic ductal cell
18
T-helper 17 cell
18
caudate nucleus
17
K562
17
T cell
17
coronary artery
17
right atrium auricular region
16
endothelial cell of hepatic sinusoid
16
foreskin fibroblast
16
pancreas
16
sigmoid colon
16
tibial artery
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
15
natural killer cell
15
omental fat pad
15
osteoblast
15
pancreatic beta cell
15
substantia nigra
14
H1-hESC
14
endothelial cell of umbilical vein
14
frontal cortex
14
heart right ventricle
14
keratinocyte
14
pancreatic acinar cell
14
testis
13
T-helper 2 cell
13
cerebellum
13
gastrocnemius medialis
13
mononuclear cell
13
ovary
13
pancreatic alpha cell
13
putamen
13
skeletal muscle myoblast
13
skeletal muscle tissue
13
thyroid gland
13
trophoblast cell
13
upper lobe of left lung
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
HepG2
12
ascending aorta
12
astrocyte
12
lymphoblastoid cell line
12
neuroblastoma cell
12
pericyte cell
12
psoas muscle
12
transverse colon
11
bronchial epithelial cell
11
excitatory neuron
11
fibroblast of cardiac tissue
11
fibroblast of lung
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neutrophil
11
prostate gland
11
temporal lobe
10
Ammon's horn
10
Rhabdomyosarcoma
10
chorionic villus
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
layer of hippocampus
10
left cardiac atrium
10
mammary epithelial cell
10
muscle of trunk
10
pancreatic delta cell
9
Peyer's patch
9
choroid plexus epithelial cell
9
endocrine pancreas
9
esophagus muscularis mucosa
9
hepatic stellate cell
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
neurosphere
8
22Rv1
8
SK-N-DZ
8
aorta
8
cardiac muscle cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
kidney tubule cell
8
mammary gland epithelial cell
8
pancreatic stellate cell
8
right renal pelvis
8
skeletal muscle satellite cell
7
B-lymphoblastoid cell line
7
GM12865
7
GM12878
7
H9
7
HEK293
7
HeLa-S3
7
IMR-90
7
amygdala
7
breast epithelium
7
epithelial cell of prostate
7
erythroblast
7
fibroblast cell line
7
mature neutrophil
7
retinal pigment epithelial cell
7
right lobe of liver
7
right renal cortex interstitium
7
smooth muscle cell
7
thoracic aorta
7
tongue
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
GM06990
6
GM12864
6
HT-29
6
SW480
6
angular gyrus
6
anterior cingulate cortex
6
dermis blood vessel endothelial cell
6
diffuse intrinsic pontine glioma
6
esophagus
6
fibroblast of villous mesenchyme
6
globus pallidus
6
hypothalamus
6
induced pluripotent stem cell
6
lower leg skin
6
midbrain
6
nucleus accumbens
6
skin fibroblast
6
trophoblast
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Chondroid Chordoma
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Daoy
Organ
3
connective tissue
Life stage
2
adult
1
unknown
Date released
1
February, 2021
1
May, 2022
1
October, 2019
Software used
1
chromhmm
1
encode-ccres
1
macs
Lab
Stephen Parker, UMich
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_type!
in vitro differentiated cells
lab.title!
Stephen Parker, UMich
annotation_category!
Target gene links
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP