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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
3
snATAC-seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
5
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
in vitro differentiated cells
5
primary cell
1
stem cell
Biosample term
85
heart
73
brain
72
kidney
67
muscle of arm
64
stomach
62
lung
60
placenta
58
muscle of leg
56
large intestine
55
small intestine
54
H1-hESC
54
muscle of back
53
HeLa-S3
52
left lung
48
thymus
45
right lung
42
right kidney
40
renal cortex interstitium
40
renal pelvis
37
adrenal gland
36
left kidney
35
spinal cord
31
CD8-positive, alpha-beta T cell
31
endothelial cell
29
macrophage
29
monocyte
28
fibroblast
28
islet of Langerhans
23
CD4-positive, alpha-beta memory T cell
23
EndoC_BH1
23
liver
22
K562
22
pericyte cell
21
keratinocyte
20
breast cancer cell
20
pancreatic ductal cell
19
CD14-positive monocyte
19
HFFc6
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
foreskin keratinocyte
19
heart left ventricle
19
smooth muscle cell
18
trophoblast cell
17
B cell
17
T-helper 17 cell
17
astrocyte
17
muscle of trunk
17
retina
16
H9
16
HepG2
16
chorionic villus
16
regulatory T cell
15
hepatocyte
15
osteoblast
14
heart right ventricle
14
pancreatic acinar cell
13
bronchial epithelial cell
13
fibroblast of cardiac tissue
13
neurosphere
13
pancreatic beta cell
13
spleen
12
T cell
12
common myeloid progenitor, CD34-positive
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
neuroblastoma cell
12
pancreatic delta cell
11
GM12878
11
epithelial cell of prostate
11
erythroblast
11
excitatory neuron
11
fibroblast of lung
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
gastric cancer cell
10
lymphocyte
10
neutrophil
10
right renal cortex interstitium
10
skeletal muscle myoblast
10
trophoblast
9
HEK293
9
IMR-90
9
SK-N-DZ
9
SK-N-SH
9
T-helper 1 cell
9
T-helper 2 cell
9
cardiac muscle cell
9
liposarcoma
9
mammary epithelial cell
9
pancreatic alpha cell
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
NAMALWA cell
8
colon epithelial cell
8
fibroblast cell line
8
fibroblast of dermis
8
limb
8
ovary
8
pancreatic stellate cell
8
pituitary stalk
8
retinal pigment epithelial cell
8
skeletal muscle fiber
8
skin fibroblast
8
testis
7
AG04449 cell
7
AG04450 cell
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
CMK
7
Jurkat
7
MCF-7
7
MG63
7
PC-9
7
SK-N-MC
7
WERI-Rb-1
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
eye
7
fibroblast of pulmonary artery
7
glomerular endothelial cell
7
memory B cell
7
pancreas
7
skeletal muscle satellite cell
7
skeletal muscle tissue
6
Daoy
6
GM08714
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HUES6
6
HUES8
6
NT2-D1 cell
6
WI38
6
adipose tissue
6
diffuse intrinsic pontine glioma
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
6
glomerular visceral epithelial cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
mammary gland epithelial cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
psoas muscle
6
type I muscle cell
5
A549
5
A673
5
CD4-positive helper T cell
5
Chondroid Chordoma
5
CyT49
5
Ewing sarcoma
5
GM19240
5
HCT-116 cell
5
HK-2 cell
5
HUES64
5
KARPAS-422 cell
5
L1-S8
5
Panc1
5
acute myeloid leukemia
5
coronary artery
5
enterocyte
5
esophageal adenocarcinoma
5
kidney epithelial cell
5
natural killer cell
5
non-pigmented ciliary epithelial cell
5
prostate cancer cell line
5
pulmonary artery endothelial cell
5
renal cortical epithelial cell
5
sigmoid colon
5
skeletal muscle cell
5
skin of body
5
smooth muscle cell of the coronary artery
5
umbilical cord
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
COLO205
4
Caco-2 cell
4
DND-41
4
EH
4
EL
4
ELF-1
4
ELR
4
G401
4
GM03348
4
GM12873
4
GM12875
Organ
6
connective tissue
Life stage
adult
1
unknown
Date released
3
February, 2024
1
March, 2020
1
May, 2022
1
October, 2022
Software used
2
macs
1
deeptools
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
2
AMP-T2D consortium
Project
6
AMP
RFA
4
AMP2
2
AMP
biosample_type!
in vitro differentiated cells
relevant_life_stage!
adult
biosample_term_name!
BE(2)-C
Showing 6 of 6 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP