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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
chromatin state
1
accessible chromatin
Annotation Category
5
cis-regulatory elements
4
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
2
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
primary cell
Biosample term
45
heart
41
stomach
40
kidney
38
A549
36
brain
33
muscle of arm
32
lung
32
neural progenitor cell
31
small intestine
30
muscle of leg
29
adrenal gland
29
placenta
29
retina
27
large intestine
26
left lung
26
muscle of back
23
right lung
23
thymus
21
hematopoietic multipotent progenitor cell
21
right kidney
20
liver
20
pigmented layer of retina
20
renal pelvis
19
renal cortex interstitium
18
left kidney
17
spinal cord
16
heart left ventricle
15
K562
14
adipose tissue
14
spleen
12
MCF-7
12
adipocyte
11
embryonic stem cell
11
sigmoid colon
10
HepG2
10
islet of Langerhans
10
pancreas
10
tibial nerve
9
caudate nucleus
9
gastrocnemius medialis
9
heart right ventricle
9
ovary
9
psoas muscle
9
thyroid gland
9
transverse colon
8
EndoC_BH1
8
body of pancreas
8
chorionic villus
8
coronary artery
8
endocrine pancreas
8
left cardiac atrium
8
muscle of trunk
8
tibial artery
7
HeLa-S3
7
Peyer's patch
7
chorion membrane
7
layer of hippocampus
7
right atrium auricular region
7
temporal lobe
7
testis
7
upper lobe of left lung
6
SGBS preadipocytes
6
angular gyrus
6
aorta
6
ascending aorta
6
endometrium adenocarcinoma
6
frontal cortex
6
immortal human breast epithelial cell line cell
6
omental fat pad
6
retinal pigment epithelial cell
6
skeletal muscle tissue
6
thoracic aorta
5
GM12878
5
H1-hESC
5
NAMALWA cell
5
SK-N-DZ
5
SK-N-SH
5
breast epithelium
5
cerebellum
5
chondrocyte
5
cingulate gyrus
5
colonic mucosa
5
duodenal mucosa
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
eye
5
left renal cortex interstitium
5
left renal pelvis
5
limb
5
mesenchymal stem cell
5
mucosa of rectum
5
prostate gland
5
right renal cortex interstitium
5
right renal pelvis
5
stomach smooth muscle
5
substantia nigra
5
tongue
5
trophoblast
5
urinary bladder
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
Ammon's horn
4
BE(2)-C
4
BJ cell
4
Brodmann (1909) area 46
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM19240
4
HEK293
4
HL-60
4
IMR-90
4
KARPAS-422 cell
4
LNCaP clone FGC
4
NT2-D1 cell
4
SK-N-MC
4
T47D
4
WERI-Rb-1
4
endodermal cell
4
esophagus
4
globus pallidus
4
lower leg skin
4
medulla oblongata
4
midbrain
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
occipital lobe
4
parathyroid adenoma
4
pons
4
putamen
4
right cardiac atrium
4
superior temporal gyrus
4
vagina
3
A172
3
ACHN
3
AG08396 cell
3
CMK
3
Caki2
3
Daoy
3
GM03348
3
GM04503
3
GM04504
3
GM08714
3
GM10248
3
GM10266
3
GM12875
3
GM12891
3
GM12892
3
GM18507
3
GM19238
3
GM19239
3
GM23248
3
H4
3
H7-hESC
3
HAP-1
3
HT-29
3
HUES6
3
HuH-7
3
KBM-7
3
L1-S8
3
L1-S8R
3
LHCN-M2
3
LoVo cell
3
M059J
3
MG63
3
MM.1S
3
NB4
3
NCI-H226 cell
3
OCI-LY7
3
PC-3
3
PC-9
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
SJCRH30
3
SJSA1
3
SW480
3
bipolar neuron
3
cardiac muscle cell
3
cerebellar cortex
3
embryonic facial prominence
3
germinal matrix
3
iPS DF 4.7 Cell Line
3
inferior parietal cortex
3
mesendoderm
3
middle frontal gyrus
3
olfactory neurosphere cell line
3
rectum smooth muscle tissue
3
renal cell carcinoma
3
subcutaneous adipose tissue
3
umbilical cord
3
uterus
2
8988T
Organ
5
connective tissue
Life stage
2
adult
2
embryonic
Date released
4
September, 2022
February, 2021
1
June, 2020
Software used
2
chromhmm
2
r
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_type!
primary cell
month_released!
February, 2021
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR902OPF
released
Annotation file set
: Candidate regulatory elements for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR329XEJ
released
Annotation file set
: Candidate regulatory elements for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP