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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
2
bed bed9
1
bigBed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
Biosample term
102
monocyte
57
A549
40
common myeloid progenitor, CD34-positive
35
hematopoietic multipotent progenitor cell
25
adrenal gland
24
adipose tissue
24
liver
23
B cell
22
body of pancreas
22
stomach
20
spleen
20
tibial nerve
19
CD8-positive, alpha-beta T cell
19
K562
19
MCF-7
17
caudate nucleus
16
epithelial cell of proximal tubule
16
gastrocnemius medialis
16
omental fat pad
16
sigmoid colon
16
subcutaneous adipose tissue
16
thyroid gland
16
transverse colon
15
CD8-positive, alpha-beta memory T cell
15
mononuclear cell
14
ascending aorta
14
natural killer cell
14
substantia nigra
13
Peyer's patch
13
glomerular endothelial cell
13
heart left ventricle
13
islet of Langerhans
13
ovary
13
right atrium auricular region
13
tibial artery
13
upper lobe of left lung
12
CD14-positive monocyte
12
T-helper 1 cell
12
cerebellum
12
coronary artery
12
endocrine pancreas
12
layer of hippocampus
12
psoas muscle
12
regulatory T cell
11
HeLa-S3
11
aorta
11
frontal cortex
11
pancreas
11
temporal lobe
10
T cell
10
angular gyrus
10
endothelial cell of hepatic sinusoid
10
esophagus squamous epithelium
10
lower leg skin
10
putamen
9
Ammon's horn
9
CD4-positive, alpha-beta memory T cell
9
breast epithelium
9
endometrium adenocarcinoma
9
esophagus muscularis mucosa
9
immortal human breast epithelial cell line cell
9
parathyroid adenoma
9
right lobe of liver
9
skeletal muscle tissue
9
testis
9
thoracic aorta
9
vagina
8
CD4-positive, alpha-beta T cell
8
cingulate gyrus
8
colonic mucosa
8
duodenal mucosa
8
endothelial cell
8
esophagus
8
fibroblast of breast
8
hepatocyte
8
kidney
8
kidney tubule cell
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
prostate gland
8
retina
8
small intestine
8
stomach smooth muscle
7
LNCaP clone FGC
7
T-helper 2 cell
7
T47D
7
gastroesophageal sphincter
7
kidney loop of Henle thin ascending limb epithelial cell
7
pigmented layer of retina
6
Brodmann (1909) area 46
6
kidney glomerular epithelial cell
6
lung
6
mammary gland epithelial cell
6
muscle cell
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
right cardiac atrium
6
skeletal muscle satellite cell
6
uterus
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
GM12878
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adipocyte
5
amygdala
5
anterior cingulate cortex
5
cerebellum (Hemisphere)
5
dermis blood vessel endothelial cell
5
fibroblast of lung
5
gastrocnemius medialis(Muscle - Skeletal)
5
globus pallidus
5
heart right ventricle
5
hepatic stellate cell
5
hypothalamus
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mature neutrophil
5
mesenchymal stem cell
5
middle frontal gyrus
5
neutrophil
5
nucleus accumbens
5
skeletal muscle myoblast
5
subcutaneous abdominal adipose tissue
4
A172
4
ACC112
4
ACHN
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23248
4
GM23338
4
H4
4
H54
4
HAP-1
4
HCT116
4
HL-60
4
HS-27A
4
HS-5
4
HT-29
4
HT1080
4
KBM-7
4
KMS-11
Organ
5
connective tissue
Life stage
5
adult
4
embryonic
Date released
3
September, 2022
1
February, 2021
1
October, 2019
Software used
2
chromhmm
2
r
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
files.file_type!
bigWig
Showing 5 of 5 results
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Download
FileSet
DSR329XEJ
released
Annotation file set
: Candidate regulatory elements for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP