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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
binding sites
1
caQTL
1
eQTL
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
2
Genetic variant effects
1
Target gene links
Annotation type Category
8
ChIP-seq
DNase-seq
3
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
Available data
7
bed bed3+
3
bed bed9
1
bigBed bed9
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
4
primary cell
2
in vitro differentiated cells
1
stem cell
Biosample term
107
monocyte
52
HeLa-S3
41
H1-hESC
37
CD8-positive, alpha-beta T cell
31
endothelial cell
30
fibroblast
30
neural progenitor cell
23
retina
20
K562
20
breast cancer cell
20
macrophage
20
pigmented layer of retina
19
HFFc6
19
pericyte cell
19
smooth muscle cell
16
islet of Langerhans
13
excitatory neuron
13
hepatocyte
13
keratinocyte
12
EndoC_BH1
12
adipocyte
12
endothelial cell of hepatic sinusoid
12
neuroblastoma cell
12
pancreatic beta cell
11
HepG2
11
astrocyte
11
embryonic stem cell
11
gastric cancer cell
11
pancreatic ductal cell
10
GM12878
10
diffuse intrinsic pontine glioma
10
kidney
10
pancreatic alpha cell
9
B cell
9
Rhabdomyosarcoma
9
T cell
9
liposarcoma
9
liver
9
pancreatic acinar cell
9
pancreatic delta cell
8
B-lymphoblastoid cell line
8
T-cell acute lymphoblastic leukemia
8
erythroblast
8
esophageal adenocarcinoma
8
fibroblast cell line
8
retinal pigment epithelial cell
7
cardiac muscle cell
7
chondrocyte
7
glutamatergic neuron
7
hESC cell
7
lymphocyte
6
Chondroid Chordoma
6
H9
6
acute myeloid leukemia
6
adipose tissue
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
fibroblast of cardiac tissue
6
mammary epithelial cell
6
neuroblastoma cell line
6
skeletal muscle satellite cell
5
CyT49
5
Ewing sarcoma
5
HUES8
5
MCF-7
5
SGBS preadipocytes
5
basal cell
5
diffuse large B-cell lymphoma
5
esophageal squamous cell carcinoma
5
foreskin fibroblast
5
gabaergic neuron
5
glioblastoma multiforme cancer stem cell
5
mammary gland epithelial cell
5
memory B cell
5
osteosarcoma
5
prostate cancer cell line
5
skeletal muscle fiber
5
type I muscle cell
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
GM19240
4
HS-SY-2 cell
4
Jurkat
4
Mantle cell lymphoma
4
RS4-11 cell
4
Rh-4 cell
4
Th1 cell
4
Tumor-derived cell line
4
aortic endothelial cell
4
blood vessel smooth muscle cell
4
brain
4
bronchial epithelial cell
4
cardiomyocytes (cardiac muscle cell)
4
colon adenocarcinoma
4
coronary artery
4
dermal fibroblast
4
endothelial cell of lymphatic vessel
4
endothelial cell of umbilical vein
4
enteric smooth muscle cell
4
erythroid progenitor cell
4
glioblastoma cell
4
glioma cell
4
heart
4
heart left ventricle
4
hepatic stellate cell
4
immortal neural cell line cell
4
left cardiac atrium
4
lymphoblastoid cell line
4
mast cell
4
melanoma
4
mesenchymal stem cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
natural killer cell
4
neuronal stem cell
4
osteoblast
4
plasma cell
4
smooth muscle cell of the coronary artery
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
4
type II muscle cell
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
B-lymphocyte
3
BE(2)-C
3
BJ cell
3
COLO-320 cell
3
COLO205
3
Caco-2 cell
3
DND-41 cell
3
GM06990
3
GM10847
3
GM12864
3
GM12865
3
GM12872
3
GM12873
3
GM12875
3
GM12891
3
GM12892
3
GM18526
3
GM18951
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HEK293-T-REx cell
3
HL-60
3
IMR-90
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
PANC-1 cell
3
Pancreatic progenitors (progenitor cell of endocrine pancreas)
3
Raji cell
3
SAEC
3
SH-SY5Y cell
3
SK-N-MC
3
SK-N-SH_RA
3
Schwann cell
3
T-47D cell
3
U-87 MG
3
U2OS
3
WERI-Rb-1
3
WI-38 cell
3
activated CD4-positive, alpha-beta T cell
3
aortic adventitial fibroblast
3
choroid plexus epithelial cell
3
chronic lymphocytic leukemia cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
fibroblast of lung
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
glial cell
3
hematopoietic cell
3
iPSC derived cell line
3
inhibitory neuron
3
leukemic stem cell
3
lymphoblast
3
megakaryocyte
3
olfactory receptor cell
3
oligodendrocyte
3
pancreas
3
peptic cell
3
preadipocyte
3
regulatory T cell
Organ
7
connective tissue
Life stage
1
unknown
Date released
2
February, 2021
2
February, 2024
1
March, 2020
1
May, 2022
1
October, 2022
Software used
4
macs
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
rasqual
Lab
4
AMP-T2D consortium
3
Stephen Parker, UMich
Project
7
AMP
RFA
4
AMP
3
AMP2
annotation_type_category!
DNase-seq
Showing 7 of 7 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP