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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
caQTL
1
eQTL
Annotation Category
2
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
RNA-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
10
endothelial cell of hepatic sinusoid
8
kidney
5
endothelial cell
5
hepatocyte
4
smooth muscle cell
3
mesenchymal stem cell
3
type I muscle cell
3
type II muscle cell
2
fibroblast
2
skeletal muscle fiber
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
T cell
1
adipocyte
1
glial cell
1
glomerular visceral epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
leukocyte
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
neural cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
skeletal muscle satellite cell
1
undifferentiated ESC (H9 cell line)
Organ
3
connective tissue
Date released
2
February, 2024
1
October, 2022
Software used
1
eigenmt
1
macs
1
qTLtools
1
rasqual
Lab
3
Stephen Parker, UMich
Project
3
AMP
RFA
11
AMP
3
AMP2
annotation_type_category!
pCHi-C
Showing 3 of 3 results
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FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP