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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
1
accessible chromatin
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
ChIP-seq
1
snATAC-seq
Available data
15
bed bed3+
3
bed bed9
1
bigBed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
Biosample term
25
kidney
24
heart
19
brain
19
retina
19
stomach
18
A549
17
muscle of arm
16
lung
16
monocyte
16
muscle of leg
15
small intestine
14
B cell
14
adrenal gland
14
endothelial cell
14
fibroblast
14
hepatocyte
14
placenta
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
large intestine
13
left lung
13
muscle of back
13
pigmented layer of retina
11
heart left ventricle
11
macrophage
11
pericyte cell
11
right kidney
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
T cell
9
astrocyte
9
left kidney
9
liver
9
pancreatic beta cell
8
pancreatic alpha cell
8
smooth muscle cell
7
CD8-positive, alpha-beta memory T cell
7
adipose tissue
7
pancreatic acinar cell
7
pancreatic ductal cell
7
spinal cord
7
spleen
6
K562
6
coronary artery
6
endothelial cell of hepatic sinusoid
6
heart right ventricle
6
mononuclear cell
6
natural killer cell
6
pancreatic delta cell
6
regulatory T cell
6
skeletal muscle satellite cell
6
tibial nerve
5
MCF-7
5
T-helper 1 cell
5
T-helper 17 cell
5
T-helper 2 cell
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
erythroblast
5
fibroblast of cardiac tissue
5
inhibitory neuron
5
islet of Langerhans
5
pancreas
5
retinal pigment epithelial cell
5
sigmoid colon
5
tibial artery
5
trophoblast cell
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
adipocyte
4
angular gyrus
4
aorta
4
ascending aorta
4
body of pancreas
4
caudate nucleus
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
foreskin keratinocyte
4
gastrocnemius medialis
4
keratinocyte
4
mammary gland epithelial cell
4
memory B cell
4
mesenchymal stem cell
4
muscle of trunk
4
neural progenitor cell
4
omental fat pad
4
osteoblast
4
ovary
4
pancreatic stellate cell
4
psoas muscle
4
right atrium auricular region
4
temporal lobe
4
thoracic aorta
4
thyroid gland
4
transverse colon
4
type II pneumocyte
3
cardiac fibroblast
3
HeLa-S3
3
Peyer's patch
3
cardiac muscle cell
3
cerebellum
3
chorion membrane
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enterocyte
3
fibroblast of dermis
3
fibroblast of lung
3
frontal cortex
3
glomerular visceral epithelial cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
luminal epithelial cell of mammary gland
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
pancreatic polypeptide-secreting cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle fiber
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
skin fibroblast
3
testis
3
type I pneumocyte
3
upper lobe of left lung
2
22Rv1
2
Ammon's horn
2
Brodmann (1909) area 46
2
HepG2
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SGBS preadipocytes
2
SK-N-DZ
2
SK-N-SH
2
T follicular helper cell
2
T47D
2
aortic endothelial cell
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
blood vessel smooth muscle cell
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
ciliated cell
2
cingulate gyrus
2
club cell
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endodermal cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
extracellular matrix secreting cell
2
eye
2
fetal cardiomyocyte
2
fibroblast of breast
2
foreskin fibroblast
2
gabaergic neuron
2
gamma-delta T cell
2
germinal matrix
2
globus pallidus
2
glomerular endothelial cell
2
glutamatergic neuron
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
left cardiac atrium
2
limb
2
lower leg skin
2
mature natural killer cell
2
medulla oblongata
Organ
4
connective tissue
Life stage
2
adult
1
embryonic
1
unknown
Date released
2
September, 2022
1
May, 2022
1
October, 2019
Software used
3
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP