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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
ChIP-seq
7
DNase-seq
3
snATAC-seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
6
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
5
primary cell
1
in vitro differentiated cells
1
stem cell
Biosample term
51
HeLa-S3
46
H1-hESC
36
endothelial cell
36
islet of Langerhans
28
fibroblast
28
macrophage
26
retina
24
hepatocyte
20
pigmented layer of retina
20
smooth muscle cell
19
HFFc6
19
kidney
19
pancreatic ductal cell
19
pericyte cell
18
epithelial cell of proximal tubule
18
neural progenitor cell
18
subcutaneous adipose tissue
17
K562
17
glomerular endothelial cell
17
pancreatic beta cell
16
induced pluripotent stem cell
16
liver
16
pancreatic alpha cell
15
pancreatic acinar cell
15
pancreatic delta cell
14
excitatory neuron
13
regulatory T cell
12
coronary artery
12
right atrium auricular region
12
tibial nerve
11
T cell
11
adipose tissue
11
astrocyte
11
cardiomyocytes
11
heart
11
tibial artery
10
endothelial cell of hepatic sinusoid
10
frontal cortex
10
monocyte
10
pancreatic stellate cell
10
putamen
9
B cell
9
CD8-positive, alpha-beta T cell
9
T-helper 1 cell
9
adipocyte
9
caudate nucleus
9
extended pluripotent stem (EPS) cells
9
glomerular visceral epithelial cell
9
heart left ventricle
9
omental fat pad
9
pancreas
9
progenitor cell of endocrine pancreas
9
retinal pigment epithelial cell
9
skeletal muscle fiber
8
Ammon's horn
8
T-helper 17 cell
8
cerebellum
8
glutamatergic neuron
8
natural killer cell
8
skeletal muscle satellite cell
7
GM12878
7
ascending aorta
7
body of pancreas
7
cardiomyocytes (cardiac muscle cell)
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphoblastoid cell line
7
memory B cell
7
mesangial cell
7
mesenchymal stem cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
osteoblast
7
substantia nigra
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
EndoC_BH1
6
H9
6
SGBS preadipocytes
6
amygdala
6
anterior cingulate cortex
6
brain
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
erythroblast
6
hypothalamus
6
iPSC derived cell line
lymphocyte
6
naive B cell
6
nucleus accumbens
6
olfactory receptor cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
chondrocyte
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart right ventricle
5
hepatic stellate cell
5
inhibitory neuron
5
keratinocyte
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
right lobe of liver
5
spleen
5
stomach
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
CyT49
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
T-helper 2 cell
4
activated CD4-positive, alpha-beta T cell
4
adrenal gland
4
adult endothelial progenitor cell
4
blood vessel smooth muscle cell
4
bone tissue
4
cardiac muscle cell
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endothelial cell of lymphatic vessel
4
endothelial cell of umbilical vein
4
enteric smooth muscle cell
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney glomerular epithelial cell
4
leukocyte
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
megakaryocyte
4
mesothelial cell
4
myofibroblast cell
4
nephron progenitor
4
occipital lobe
4
ovary
4
pancreatic MUC5B+ductal cell
Organ
7
connective tissue
Life stage
1
unknown
Date released
3
February, 2024
1
June, 2020
1
March, 2020
May, 2021
1
May, 2022
1
October, 2022
Software used
3
macs
1
deeptools
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
4
AMP2
3
AMP
month_released!
May, 2021
biosample_term_name!
lymphocyte
annotation_type_category!
ChIP-seq
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP