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Schema
Citing CMDGA
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Annotation type
3
target gene predictions
1
caQTL
1
eQTL
Annotation Category
cis-regulatory elements
3
Target gene links
2
Genetic variant effects
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
RNA-seq
1
pCHi-C
1
snATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
54
HeLa-S3
46
H1-hESC
30
islet of Langerhans
25
heart
23
kidney
22
K562
21
stomach
20
brain
19
HFFc6
19
endothelial cell
19
liver
19
lung
18
A549
18
epithelial cell of proximal tubule
18
hepatocyte
17
adrenal gland
17
muscle of arm
17
small intestine
16
glomerular endothelial cell
16
induced pluripotent stem cell
16
subcutaneous adipose tissue
15
adipose tissue
15
macrophage
15
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
13
thymus
12
fibroblast
12
neural progenitor cell
12
tibial nerve
11
body of pancreas
11
cardiomyocytes
11
coronary artery
11
heart left ventricle
11
pancreatic ductal cell
11
regulatory T cell
11
right atrium auricular region
11
right kidney
11
right lung
11
smooth muscle cell
10
caudate nucleus
10
frontal cortex
10
hematopoietic multipotent progenitor cell
10
pancreatic delta cell
10
pericyte cell
10
renal cortex interstitium
10
renal pelvis
10
tibial artery
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
T-helper 1 cell
9
T-helper 17 cell
9
cerebellum
9
extended pluripotent stem (EPS) cells
9
left kidney
9
omental fat pad
9
pancreatic alpha cell
9
pancreatic beta cell
9
progenitor cell of endocrine pancreas
9
putamen
9
spleen
9
substantia nigra
8
T cell
8
ascending aorta
8
pancreatic acinar cell
8
spinal cord
7
Ammon's horn
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
cardiomyocytes (cardiac muscle cell)
7
glomerular visceral epithelial cell
7
heart right ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
natural killer cell
7
ovary
7
psoas muscle
6
amygdala
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreas
6
pancreatic stellate cell
6
retina
6
right lobe of liver
6
sigmoid colon
6
skeletal muscle tissue
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
EndoC_BH1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
MCF-7
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T-helper 2 cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
aorta
5
gastrocnemius medialis(Muscle - Skeletal)
5
keratinocyte
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mammary gland epithelial cell
5
mesangial cell
5
mesenchymal stem cell
5
monocyte
5
testis
5
thyroid gland
5
transverse colon
5
trophoblast cell
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
adipocyte
4
adult endothelial progenitor cell
4
astrocyte
4
bone tissue
4
cartilage tissue
4
chorionic villus
4
colon epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
endothelial cell of umbilical vein
4
esophagus
4
fibroblast of cardiac tissue
4
foreskin keratinocyte
4
gastrocnemius medialis
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
muscle of trunk
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
neutrophil
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
Organ
5
connective tissue
Life stage
1
adult
1
embryonic
Date released
2
September, 2022
1
February, 2024
1
March, 2020
May, 2021
1
October, 2022
Software used
3
r
1
deeptools
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
rasqual
1
samtools
umitools
Lab
3
AMP-T2D consortium
2
Stephen Parker, UMich
Project
5
AMP
RFA
3
AMP
2
AMP2
month_released!
May, 2021
software_used.software.name!
umitools
annotation_category!
cis-regulatory elements
Showing 5 of 5 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP