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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
target gene predictions
1
caQTL
1
eQTL
1
gene expression
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
2
Target gene links
1
Gene expression levels
Annotation type Category
ChIP-seq
8
DNase-seq
3
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
7
bed bed3+
1
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
5
primary cell
2
in vitro differentiated cells
1
stem cell
Biosample term
28
fibroblast
19
pericyte cell
18
subcutaneous adipose tissue
13
adipocyte
12
adipose tissue
10
pancreatic stellate cell
9
omental fat pad
8
mesenchymal stem cell
8
osteoblast
7
mesangial cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Fibroblast
5
Mesangial Cell
5
chondrocyte
5
fibroblast of cardiac tissue
5
hepatic stellate cell
4
adult endothelial progenitor cell
4
bone tissue
4
cartilage tissue
4
skin fibroblast
4
visceral abdominal adipose tissue
3
brain pericyte
3
pancreatic quiescent stellate cell
2
articular chondrocyte
2
extracellular matrix secreting cell
2
fat cell
2
foreskin fibroblast
2
luteal cell
2
stromal cell
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
GM23248
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
SGBS preadipocytes
1
activated pancreatic stellate cell
1
adipose-derived mesenchymal stem cell
1
beige adipocyte
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
kidney interstitial fibroblast
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
preadipocyte
1
pulmonary interstitial fibroblast
1
quiescent pancreatic stellate cell
1
white adipose cell
1
white adipose tissue
Organ
8
connective tissue
Life stage
1
unknown
Date released
3
February, 2024
1
June, 2020
1
March, 2020
1
May, 2021
1
May, 2022
1
October, 2022
Software used
3
macs
1
abc
1
deeptools
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
4
AMP
4
AMP2
annotation_type_category!
ChIP-seq
Showing 8 of 8 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP