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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
snATAC-seq
1
DNase-seq
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
Biosample term
19
fibroblast
9
osteoblast
9
pericyte cell
8
adipocyte
7
chondrocyte
7
fibroblast of cardiac tissue
6
hepatic stellate cell
5
foreskin fibroblast
5
mesenchymal stem cell
5
skin fibroblast
4
pancreatic stellate cell
4
preadipocyte
3
cardiac fibroblast
3
GM23248
3
adipose tissue
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
pulmonary interstitial fibroblast
2
adipose tissue derived mesenchymal stem cell
2
brain pericyte
2
columnar chondrocyte
2
mesangial cell
2
omental fat pad
2
subcutaneous adipose tissue
1
SGBS preadipocytes
1
adipose-derived mesenchymal stem cell
1
cartilage tissue
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
embryonic fibroblast
1
fibroblast of peridontal ligament
1
fibroblast of the conjunctiva
1
luteal cell
1
stromal cell
Organ
5
connective tissue
Life stage
1
unknown
Date released
2
February, 2021
1
February, 2024
1
June, 2020
1
May, 2022
Software used
5
macs
5
r
3
chromhmm
2
encode-ccres
1
abc
1
deeptools
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
rasqual
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
4
AMP
1
AMP2
biosample_term_name!
quiescent pancreatic stellate cell
Showing 5 of 5 results
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FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP