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Schema
Citing CMDGA
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Annotation type
3
chromatin state
1
gene expression
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
Annotation type Category
3
ChIP-seq
1
snRNA-seq
Available data
bed bed3+
3
bed bed9
1
bigBed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
Biosample term
14
subcutaneous adipose tissue
12
adipose tissue
9
omental fat pad
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Fibroblast
5
Mesangial Cell
5
mesangial cell
5
pancreatic stellate cell
4
adipocyte
4
bone tissue
4
mesenchymal stem cell
4
visceral abdominal adipose tissue
3
adult endothelial progenitor cell
3
cartilage tissue
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
3
osteoblast
3
pancreatic quiescent stellate cell
2
articular chondrocyte
2
fibroblast
2
foreskin fibroblast
2
skin fibroblast
1
GM23248
1
HT1080
1
activated pancreatic stellate cell
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
fat cell
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
kidney interstitial fibroblast
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
pericyte cell
1
quiescent pancreatic stellate cell
1
stromal cell of bone marrow
Organ
4
connective tissue
Life stage
2
adult
1
embryonic
Date released
2
September, 2022
1
February, 2024
1
October, 2019
Software used
3
chromhmm
1
deeptools
1
r
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP
1
AMP2
files.file_type!
bed bed3+
Showing 4 of 4 results
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Download
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP