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Citing CMDGA
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Annotation type
2
accessible chromatin
1
eQTL
1
gene expression
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
2
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
3
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
8
fibroblast
4
adipocyte
4
mesenchymal stem cell
2
pancreatic stellate cell
1
preadipocyte
1
subcutaneous adipose tissue
1
visceral abdominal adipose tissue
Organ
4
connective tissue
Life stage
1
unknown
Date released
6
September, 2022
4
February, 2021
3
February, 2024
1
June, 2020
1
March, 2020
1
May, 2021
1
May, 2022
1
October, 2019
1
October, 2022
Software used
2
macs
1
deeptools
1
qTLtools
1
r
1
samtools
1
umitools
Lab
3
Stephen Parker, UMich
1
AMP-T2D consortium
Project
4
AMP
RFA
3
AMP2
1
AMP
Showing 4 of 4 results
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FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP