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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
2
bed bed9
1
bigBed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
Biosample term
88
monocyte
57
A549
40
common myeloid progenitor, CD34-positive
35
hematopoietic multipotent progenitor cell
24
adrenal gland
23
B cell
23
liver
21
adipose tissue
21
retina
21
stomach
20
body of pancreas
20
pigmented layer of retina
19
K562
19
MCF-7
19
spleen
19
tibial nerve
18
CD8-positive, alpha-beta T cell
caudate nucleus
16
gastrocnemius medialis
16
sigmoid colon
16
thyroid gland
16
transverse colon
15
CD8-positive, alpha-beta memory T cell
15
mononuclear cell
15
omental fat pad
14
ascending aorta
14
heart left ventricle
14
pancreas
13
Peyer's patch
13
coronary artery
13
substantia nigra
13
tibial artery
13
upper lobe of left lung
12
CD14-positive monocyte
12
cerebellum
12
endocrine pancreas
12
islet of Langerhans
12
layer of hippocampus
12
natural killer cell
12
ovary
12
psoas muscle
12
right atrium auricular region
11
HeLa-S3
11
aorta
11
frontal cortex
11
temporal lobe
10
T cell
10
angular gyrus
10
endothelial cell of hepatic sinusoid
10
esophagus squamous epithelium
10
lower leg skin
10
subcutaneous adipose tissue
9
Ammon's horn
9
CD4-positive, alpha-beta memory T cell
9
breast epithelium
9
endometrium adenocarcinoma
9
esophagus muscularis mucosa
9
immortal human breast epithelial cell line cell
9
kidney
9
parathyroid adenoma
9
putamen
9
skeletal muscle tissue
9
thoracic aorta
8
CD4-positive, alpha-beta T cell
8
T-helper 1 cell
8
cingulate gyrus
8
colonic mucosa
8
duodenal mucosa
8
esophagus
8
fibroblast of breast
8
kidney tubule cell
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
prostate gland
8
right lobe of liver
8
small intestine
8
stomach smooth muscle
8
testis
8
vagina
7
LNCaP clone FGC
7
T-helper 2 cell
7
T47D
7
gastroesophageal sphincter
7
regulatory T cell
6
Brodmann (1909) area 46
6
mammary gland epithelial cell
6
muscle cell
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
right cardiac atrium
5
GM12878
5
cerebellar cortex
5
dermis blood vessel endothelial cell
5
fibroblast of lung
5
globus pallidus
5
heart right ventricle
5
hepatocyte
5
kidney glomerular epithelial cell
5
lung
5
mature neutrophil
5
mesenchymal stem cell
5
middle frontal gyrus
5
neutrophil
5
skeletal muscle satellite cell
5
subcutaneous abdominal adipose tissue
5
uterus
4
A172
4
ACC112
4
ACHN
4
C1 segment of cervical spinal cord
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23248
4
GM23338
4
H4
4
H54
4
HAP-1
4
HCT116
4
HL-60
4
HS-27A
4
HS-5
4
HT-29
4
HT1080
4
KBM-7
4
KMS-11
4
LHCN-M2
4
Loucy
4
M059J
4
MM.1S
4
NB4
4
NCI-H929
4
OCI-LY1
4
OCI-LY3
4
OCI-LY7
4
PC-3
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
RWPE2
4
SJSA1
4
SK-MEL-5
4
SU-DHL-6
4
SW480
4
adipocyte
4
amygdala
4
anterior cingulate cortex
4
bipolar neuron
4
cartilage tissue
4
cerebellum (Hemisphere)
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
fibroblast of dermis
4
gastrocnemius medialis(Muscle - Skeletal)
4
glutamatergic neuron
4
heart
4
hepatic stellate cell
4
hypothalamus
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
left ventricle myocardium
4
medulla oblongata
4
midbrain
4
mucosa of stomach
4
nucleus accumbens
4
occipital lobe
4
pancreatic alpha cell
4
pancreatic beta cell
4
peripheral blood mononuclear cell
4
pons
4
skeletal muscle myoblast
4
superior temporal gyrus
4
urinary bladder
3
8988T
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
COLO829
3
Caco-2 cell
3
GM10248
3
GM10266
3
GM12875
3
GM19238
3
GM19239
3
GM19240
3
HPDE6-E6E7
3
HuH-7
3
HuH-7.5
3
KARPAS-422 cell
3
LoVo cell
Organ
5
connective tissue
Life stage
5
adult
4
embryonic
1
unknown
Date released
3
September, 2022
1
February, 2021
1
October, 2019
Software used
2
chromhmm
2
r
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
caudate nucleus
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR329XEJ
released
Annotation file set
: Candidate regulatory elements for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP