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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
gene expression
Annotation Category
3
Target gene links
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
5
DNase-seq
4
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
snRNA-seq
Available data
5
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
primary cell
Biosample term
41
heart
41
stomach
37
A549
35
kidney
33
brain
33
lung
32
muscle of arm
31
adrenal gland
31
small intestine
29
placenta
27
common myeloid progenitor, CD34-positive
27
large intestine
27
muscle of leg
26
left lung
26
muscle of back
23
CD14-positive monocyte
23
thymus
22
right lung
21
hematopoietic multipotent progenitor cell
20
right kidney
19
B cell
18
CD4-positive, alpha-beta memory T cell
18
epithelial cell of proximal tubule
18
left kidney
18
renal cortex interstitium
18
renal pelvis
17
liver
16
adipose tissue
16
endothelial cell
16
glomerular endothelial cell
16
monocyte
15
neural progenitor cell
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
14
hepatocyte
14
spleen
13
K562
13
T-helper 1 cell
13
T-helper 17 cell
13
islet of Langerhans
13
regulatory T cell
12
mononuclear cell
12
trophoblast cell
11
H1-hESC
11
MCF-7
11
body of pancreas
11
cardiomyocytes
11
heart left ventricle
11
pancreatic ductal cell
11
pericyte cell
11
sigmoid colon
10
adipocyte
10
induced pluripotent stem cell
10
ovary
10
pituitary stalk
10
smooth muscle cell
9
T-helper 2 cell
9
extended pluripotent stem (EPS) cells
9
gastrocnemius medialis
9
muscle of trunk
9
natural killer cell
9
progenitor cell of endocrine pancreas
9
psoas muscle
9
thyroid gland
9
transverse colon
8
EndoC_BH1
8
T cell
8
chorionic villus
8
endocrine pancreas
8
foreskin keratinocyte
8
pancreatic acinar cell
8
tibial nerve
7
HeLa-S3
7
caudate nucleus
7
dendritic cell
7
fibroblast of cardiac tissue
7
fibroblast of dermis
7
fibroblast of lung
7
glomerular visceral epithelial cell
7
heart right ventricle
7
keratinocyte
7
kidney loop of Henle thin ascending limb epithelial cell
7
mammary gland epithelial cell
7
pancreatic delta cell
7
retina
7
skeletal muscle tissue
7
testis
6
CD8-positive, alpha-beta T cell
6
Peyer's patch
6
astrocyte
6
cerebellum
6
chorion membrane
6
coronary artery
6
endometrium adenocarcinoma
6
frontal cortex
6
immortal human breast epithelial cell line cell
6
kidney interstitial cell
6
layer of hippocampus
6
mesenchymal stem cell
6
naive T cell
6
neurosphere
6
omental fat pad
6
pancreatic alpha cell
6
pancreatic beta cell
6
right atrium auricular region
6
skeletal muscle myoblast
6
upper lobe of left lung
5
SK-N-SH
5
aorta
5
ascending aorta
5
breast epithelium
5
colon epithelial cell
5
endothelial cell of umbilical vein
5
epithelial cell of prostate
5
foreskin fibroblast
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
kidney tubule cell
5
mesangial cell
5
osteoblast
5
pancreas
5
pancreatic stellate cell
5
skeletal muscle satellite cell
5
skin fibroblast
5
subcutaneous adipose tissue
5
substantia nigra
5
temporal lobe
5
tibial artery
5
vagina
4
22Rv1
4
Brodmann (1909) area 46
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
angular gyrus
4
bone tissue
4
bronchial epithelial cell
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
cingulate gyrus
4
colonic mucosa
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
duodenal mucosa
4
endodermal cell
4
esophagus
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast
4
fibroblast of breast
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
macrophage
4
memory B cell
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
nephron progenitor
4
neutrophil
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
parathyroid adenoma
4
prostate gland
4
right renal cortex interstitium
4
right renal pelvis
4
stomach smooth muscle
4
thoracic aorta
4
tongue
4
trophoblast
4
urinary bladder
4
uterus
3
A673
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
Organ
6
connective tissue
Life stage
2
adult
2
embryonic
Date released
4
September, 2022
1
February, 2024
1
May, 2021
Software used
5
macs
5
r
3
chromhmm
2
encode-ccres
1
abc
1
deeptools
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
rasqual
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
Showing 6 of 6 results
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Download
FileSet
DSR902OPF
released
Annotation file set
: Candidate regulatory elements for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR329XEJ
released
Annotation file set
: Candidate regulatory elements for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP