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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
128
monocyte
51
kidney
49
heart
46
stomach
45
CD8-positive, alpha-beta T cell
42
neural progenitor cell
41
islet of Langerhans
39
brain
35
lung
35
muscle of arm
34
endothelial cell
34
retina
31
adrenal gland
31
hepatocyte
31
placenta
31
small intestine
29
liver
29
muscle of leg
28
large intestine
28
macrophage
27
common myeloid progenitor, CD34-positive
27
fibroblast
27
muscle of back
26
B cell
26
left lung
25
A549
23
hematopoietic multipotent progenitor cell
23
right lung
22
EndoC_BH1
22
pancreatic ductal cell
22
renal cortex interstitium
22
renal pelvis
22
right kidney
22
thymus
21
epithelial cell of proximal tubule
20
breast cancer cell
20
pigmented layer of retina
20
regulatory T cell
20
spinal cord
20
subcutaneous adipose tissue
19
glomerular endothelial cell
19
heart left ventricle
19
spleen
18
left kidney
17
T-helper 1 cell
17
adipose tissue
16
endothelial cell of hepatic sinusoid
16
smooth muscle cell
16
tibial nerve
15
body of pancreas
15
induced pluripotent stem cell
15
pancreatic beta cell
15
right atrium auricular region
14
CD4-positive, alpha-beta memory T cell
14
MCF-7
14
T cell
14
T-helper 17 cell
14
adipocyte
14
cardiac muscle cell
14
caudate nucleus
14
coronary artery
14
foreskin fibroblast
14
foreskin keratinocyte
14
natural killer cell
14
pancreas
14
pancreatic acinar cell
14
retinal pigment epithelial cell
13
H1-hESC
13
excitatory neuron
13
omental fat pad
13
osteoblast
13
pancreatic alpha cell
13
substantia nigra
12
embryonic stem cell
12
frontal cortex
12
keratinocyte
12
lymphoblastoid cell line
12
mesenchymal stem cell
12
neuroblastoma cell
12
putamen
12
tibial artery
11
HepG2
11
astrocyte
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pericyte cell
10
K562
10
Rhabdomyosarcoma
10
cerebellum
10
gastric cancer cell
10
mammary epithelial cell
10
ovary
10
pancreatic delta cell
10
progenitor cell of endocrine pancreas
10
sigmoid colon
10
skeletal muscle myoblast
10
testis
10
trophoblast cell
10
upper lobe of left lung
9
Ammon's horn
9
CD4-positive, alpha-beta T cell
9
ascending aorta
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
endothelial cell of umbilical vein
9
fibroblast of cardiac tissue
9
glomerular visceral epithelial cell
9
liposarcoma
9
neuronal stem cell
9
neutrophil
9
prostate gland
9
skeletal muscle tissue
9
thyroid gland
9
transverse colon
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
T-helper 2 cell
8
bronchial epithelial cell
8
pancreatic stellate cell
8
psoas muscle
8
skeletal muscle fiber
8
skeletal muscle satellite cell
7
B-lymphoblastoid cell line
7
amygdala
7
chorionic villus
7
choroid plexus epithelial cell
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
fibroblast of lung
7
gastrocnemius medialis
7
heart right ventricle
7
hepatic stellate cell
7
mammary gland epithelial cell
7
mononuclear cell
7
right renal pelvis
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
H9
6
HEK293
6
HeLa-S3
6
Peyer's patch
6
anterior cingulate cortex
6
chondrocyte
6
hESC cell
6
hypothalamus
6
layer of hippocampus
6
left renal cortex interstitium
6
left renal pelvis
6
neuroblastoma cell line
6
neurosphere
6
nucleus accumbens
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
CMK
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM12878
5
Glomerular Capillary Endothelial Cell
5
HAP-1
5
HT-29
Life stage
2
embryonic
Date released
3
February, 2021
1
June, 2020
1
September, 2022
Software used
3
macs
1
encode-ccres
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_category!
Target gene links
biosample_term_name!
SW480
annotation_type!
chromatin state
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP