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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
5
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
107
monocyte
46
heart
44
kidney
44
stomach
42
CD8-positive, alpha-beta T cell
36
brain
35
muscle of arm
34
neural progenitor cell
33
lung
32
retina
30
placenta
30
small intestine
29
adrenal gland
29
muscle of leg
28
large intestine
27
common myeloid progenitor, CD34-positive
27
muscle of back
26
left lung
25
A549
25
fibroblast
24
B cell
23
endothelial cell
23
right lung
22
hematopoietic multipotent progenitor cell
22
renal cortex interstitium
22
renal pelvis
22
thymus
21
liver
21
right kidney
20
breast cancer cell
20
pigmented layer of retina
19
macrophage
19
spinal cord
18
hepatocyte
18
left kidney
17
heart left ventricle
17
spleen
16
adipocyte
15
MCF-7
15
islet of Langerhans
14
CD4-positive, alpha-beta memory T cell
14
cardiac muscle cell
14
foreskin fibroblast
14
foreskin keratinocyte
14
keratinocyte
14
pancreas
14
retinal pigment epithelial cell
14
smooth muscle cell
13
HepG2
13
T cell
12
K562
12
adipose tissue
12
excitatory neuron
12
neuroblastoma cell
11
EndoC_BH1
11
endothelial cell of hepatic sinusoid
11
mammary epithelial cell
11
mesenchymal stem cell
11
pericyte cell
10
Rhabdomyosarcoma
10
embryonic stem cell
10
endothelial cell of umbilical vein
10
gastric cancer cell
10
natural killer cell
10
osteoblast
10
pancreatic ductal cell
10
regulatory T cell
10
sigmoid colon
10
trophoblast cell
10
upper lobe of left lung
9
CD4-positive, alpha-beta T cell
9
astrocyte
9
coronary artery
9
diffuse intrinsic pontine glioma
9
fibroblast of cardiac tissue
9
liposarcoma
9
neuronal stem cell
9
pancreatic beta cell
9
skeletal muscle myoblast
9
tibial nerve
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
Peyer's patch
8
T-helper 1 cell
8
body of pancreas
8
bronchial epithelial cell
8
caudate nucleus
8
ovary
8
psoas muscle
8
thyroid gland
8
transverse colon
7
B-lymphoblastoid cell line
7
GM12878
7
H9
7
HEK293
7
chorionic villus
7
choroid plexus epithelial cell
7
esophageal adenocarcinoma
7
fibroblast cell line
7
fibroblast of lung
7
gastrocnemius medialis
7
left cardiac atrium
7
mammary gland epithelial cell
7
mononuclear cell
7
pancreatic acinar cell
7
prostate gland
7
right renal pelvis
7
testis
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
H1-hESC
6
HL-60
6
HeLa-S3
6
IMR-90
6
SGBS preadipocytes
6
chondrocyte
6
hESC cell
6
layer of hippocampus
6
left renal pelvis
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neurosphere
6
pancreatic alpha cell
skeletal muscle satellite cell
6
skeletal muscle tissue
6
substantia nigra
6
temporal lobe
6
tibial artery
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
CMK
5
Caco-2 cell
5
Ewing sarcoma
5
GM12875
5
GM19240
5
GM23248
5
HAP-1
5
HT-29
5
Jurkat
5
LHCN-M2
5
LNCAP
5
MG63
5
PC-3
5
Rh-4 cell
5
SW480
5
T-helper 17 cell
5
T-helper 2 cell
5
WERI-Rb-1
5
acute myeloid leukemia
5
ascending aorta
5
enterocyte
5
erythroblast
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
heart right ventricle
5
hepatic stellate cell
5
kidney tubule cell
5
left renal cortex interstitium
5
lymphoblastoid cell line
5
muscle of trunk
5
omental fat pad
5
osteosarcoma
5
pancreatic delta cell
5
prostate cancer cell line
5
right atrium auricular region
5
skeletal muscle fiber
5
skin fibroblast
5
thoracic aorta
4
Ammon's horn
4
B-lymphocyte
4
COLO205
4
Daoy
4
GM08714
4
GM10248
4
GM10266
4
GM12873
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
HAC cell
4
HBMEC cell
4
HCT-116 cell
4
HS-SY-2 cell
4
HUES6
4
HuH-7
4
Ishikawa
4
KARPAS-422 cell
4
KBM-7
Life stage
2
embryonic
Date released
3
February, 2021
1
June, 2020
1
September, 2022
Software used
3
macs
1
encode-ccres
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_category!
Target gene links
biosample_term_name!
skeletal muscle satellite cell
Showing 5 of 5 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP