Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
103
monocyte
35
CD8-positive, alpha-beta T cell
34
neural progenitor cell
26
kidney
26
retina
24
heart
22
brain
21
A549
20
breast cancer cell
20
fibroblast
20
pigmented layer of retina
20
stomach
19
endothelial cell
17
placenta
16
B cell
16
embryonic stem cell
15
lung
15
muscle of arm
15
muscle of leg
15
small intestine
14
adrenal gland
13
adipocyte
13
common myeloid progenitor, CD34-positive
13
large intestine
13
liver
13
macrophage
13
muscle of back
12
excitatory neuron
12
hepatocyte
12
left lung
12
neuroblastoma cell
11
HepG2
11
T cell
11
endothelial cell of hepatic sinusoid
11
hematopoietic multipotent progenitor cell
11
keratinocyte
11
pericyte cell
11
thymus
10
EndoC_BH1
10
K562
10
MCF-7
10
gastric cancer cell
10
islet of Langerhans
10
right lung
9
CD4-positive, alpha-beta memory T cell
9
Rhabdomyosarcoma
9
adipose tissue
9
astrocyte
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
pancreatic ductal cell
9
retinal pigment epithelial cell
9
smooth muscle cell
9
spinal cord
8
T-cell acute lymphoblastic leukemia
8
heart left ventricle
8
pancreatic beta cell
8
renal pelvis
8
right kidney
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
cardiac muscle cell
7
chondrocyte
7
erythroblast
7
esophageal adenocarcinoma
7
fibroblast cell line
7
fibroblast of cardiac tissue
7
left kidney
7
mature neutrophil
7
pancreatic acinar cell
6
Chondroid Chordoma
6
acute myeloid leukemia
6
hESC cell
6
natural killer cell
6
neuroblastoma cell line
6
osteoblast
6
regulatory T cell
6
renal cortex interstitium
6
skeletal muscle satellite cell
6
spleen
5
CD14-positive, CD16-negative classical monocyte
5
Ewing sarcoma
5
GM12878
5
H1-hESC
5
SGBS preadipocytes
5
T-helper 1 cell
5
T-helper 17 cell
5
T-helper 2 cell
5
bronchial epithelial cell
5
caudate nucleus
5
endothelial cell of umbilical vein
5
foreskin fibroblast
5
mammary epithelial cell
5
mammary gland epithelial cell
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
temporal lobe
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
CD14-positive monocyte
4
CD4-positive, alpha-beta T cell
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM12875
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
GM19240
4
HEK293
4
HL-60
4
HS-SY-2 cell
4
HeLa-S3
4
IMR-90
4
Jurkat
4
KARPAS-422 cell
4
Mantle cell lymphoma
4
NAMALWA cell
4
NT2-D1 cell
4
RS4-11 cell
4
Rh-4 cell
4
SK-N-MC
4
Th1 cell
4
Tumor-derived cell line
4
WERI-Rb-1
4
adipose-derived stem cell
4
alternatively activated macrophage
4
aorta
4
aortic endothelial cell
4
chorionic villus
4
choroid plexus epithelial cell
4
colon adenocarcinoma
4
coronary artery
4
dermis lymphatic vessel endothelial cell
4
diffuse large B-cell lymphoma
4
endodermal cell
4
epithelial cell of prostate
4
esophageal squamous cell carcinoma
4
fibroblast of lung
4
fibroblast of villous mesenchyme
4
foreskin keratinocyte
4
left cardiac atrium
4
mesenchymal stem cell
4
mononuclear cell
4
neuronal stem cell
4
pancreatic alpha cell
4
pancreatic delta cell
4
skeletal muscle myoblast
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
4
upper lobe of left lung
3
B-lymphocyte
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO-320 cell
3
COLO205
3
DND-41 cell
3
GM08714
3
GM10847
3
GM12872
3
GM12873
3
GM18505
3
GM18526
3
GM18951
3
GM19099
3
GM19193
3
GM23248
3
HAC cell
3
HAP-1
3
HBMEC cell
3
HCT-116 cell
3
HEK293-T-REx cell
3
HK-2 cell
3
HT-29
3
HuH-7
3
LHCN-M2
3
LoVo cell
3
MG63
3
MM.1S
3
NHEK
3
Normal Human Astrocytes
3
OCI-LY1
3
OCI-LY7
3
PANC-1 cell
3
PC-3
3
PC-9
3
Peyer's patch
3
RPMI8226
3
RWPE1
Life stage
1
embryonic
Date released
2
February, 2021
1
September, 2022
Software used
2
macs
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type_category!
DNase-seq
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP