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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
131
monocyte
68
heart
67
stomach
65
kidney
61
HeLa-S3
55
brain
52
H1-hESC
51
lung
51
muscle of arm
50
CD8-positive, alpha-beta T cell
47
adrenal gland
47
small intestine
46
neural progenitor cell
46
placenta
44
A549
43
large intestine
43
muscle of leg
41
common myeloid progenitor, CD34-positive
41
endothelial cell
41
muscle of back
39
islet of Langerhans
39
left lung
38
liver
37
retina
36
B cell
36
thymus
34
K562
34
right lung
33
hematopoietic multipotent progenitor cell
32
fibroblast
32
macrophage
32
right kidney
31
hepatocyte
31
renal cortex interstitium
31
renal pelvis
28
spinal cord
27
CD14-positive monocyte
27
left kidney
27
spleen
25
pancreatic ductal cell
25
regulatory T cell
24
adipose tissue
24
heart left ventricle
24
smooth muscle cell
23
CD4-positive, alpha-beta memory T cell
22
EndoC_BH1
22
epithelial cell of proximal tubule
21
MCF-7
21
pericyte cell
20
adipocyte
20
breast cancer cell
20
glomerular endothelial cell
20
natural killer cell
20
pigmented layer of retina
19
T-helper 1 cell
18
HFFc6
18
T cell
18
T-helper 17 cell
18
foreskin keratinocyte
18
pancreatic beta cell
18
tibial nerve
17
body of pancreas
17
foreskin fibroblast
17
keratinocyte
17
pancreas
17
pancreatic acinar cell
17
pancreatic alpha cell
17
subcutaneous adipose tissue
17
trophoblast cell
16
astrocyte
16
cardiac muscle cell
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
osteoblast
16
ovary
16
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
mesenchymal stem cell
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
transverse colon
14
GM12878
14
caudate nucleus
14
coronary artery
14
gastrocnemius medialis
14
mononuclear cell
14
right atrium auricular region
14
testis
14
thyroid gland
13
H9
13
HepG2
13
T-helper 2 cell
13
excitatory neuron
13
fibroblast of cardiac tissue
13
neutrophil
13
psoas muscle
13
skeletal muscle tissue
13
upper lobe of left lung
12
CD4-positive, alpha-beta T cell
12
embryonic stem cell
12
endothelial cell of umbilical vein
12
layer of hippocampus
12
lymphoblastoid cell line
12
muscle of trunk
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
prostate gland
12
skeletal muscle myoblast
11
chorionic villus
11
fibroblast of lung
11
heart right ventricle
11
mammary epithelial cell
11
mammary gland epithelial cell
11
substantia nigra
11
tibial artery
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
left renal cortex interstitium
10
neuronal stem cell
10
omental fat pad
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal pelvis
10
skeletal muscle satellite cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
erythroblast
9
fibroblast of dermis
9
frontal cortex
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
skin fibroblast
8
22Rv1
8
ascending aorta
8
breast epithelium
8
cerebellum
8
choroid plexus epithelial cell
8
hepatic stellate cell
8
pituitary stalk
8
putamen
8
skeletal muscle fiber
7
Ammon's horn
7
B-lymphoblastoid cell line
7
CD4-positive helper T cell
7
GM12865
7
HEK293
7
aorta
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
kidney tubule cell
7
lower leg skin
7
memory B cell
7
temporal lobe
7
thoracic aorta
7
trophoblast
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
HAP-1
6
HT-29
6
HUES8
6
IMR-90
6
Jurkat
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
chondrocyte
6
colon epithelial cell
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast of pulmonary artery
6
globus pallidus
6
hESC cell
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
occipital lobe
6
parathyroid adenoma
6
plasma cell
6
renal cortical epithelial cell
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
1
June, 2020
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
chromatin state
month_released!
March, 2020
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP