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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
88
heart
85
stomach
79
kidney
70
brain
67
lung
67
muscle of arm
64
HeLa-S3
62
small intestine
61
A549
61
adrenal gland
58
muscle of leg
58
placenta
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
52
left lung
46
thymus
45
liver
45
monocyte
45
right lung
42
B cell
42
hematopoietic multipotent progenitor cell
42
right kidney
41
islet of Langerhans
40
K562
40
endothelial cell
40
renal cortex interstitium
40
renal pelvis
39
retina
36
left kidney
34
neural progenitor cell
34
spinal cord
33
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
heart left ventricle
31
macrophage
30
adipose tissue
30
fibroblast
29
hepatocyte
27
regulatory T cell
25
adipocyte
25
smooth muscle cell
24
MCF-7
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
pancreatic ductal cell
22
CD8-positive, alpha-beta memory T cell
22
pericyte cell
22
sigmoid colon
22
tibial nerve
22
trophoblast cell
21
CD8-positive, alpha-beta T cell
21
EndoC_BH1
21
T cell
21
T-helper 17 cell
21
body of pancreas
21
foreskin keratinocyte
21
glomerular endothelial cell
21
natural killer cell
20
mononuclear cell
20
pigmented layer of retina
19
ovary
18
HFFc6
18
caudate nucleus
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
keratinocyte
18
pancreas
18
pancreatic beta cell
18
subcutaneous adipose tissue
18
thyroid gland
18
transverse colon
17
T-helper 2 cell
17
coronary artery
17
foreskin fibroblast
17
heart right ventricle
17
muscle of trunk
17
pancreatic alpha cell
17
psoas muscle
16
astrocyte
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
induced pluripotent stem cell
16
mesenchymal stem cell
16
right atrium auricular region
16
testis
15
CD4-positive, alpha-beta T cell
15
GM12878
15
cardiac muscle cell
15
embryonic stem cell
15
neutrophil
15
osteoblast
15
pancreatic acinar cell
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
skeletal muscle myoblast
15
skeletal muscle tissue
15
tibial artery
15
upper lobe of left lung
14
H9
14
endocrine pancreas
14
fibroblast of cardiac tissue
14
layer of hippocampus
14
mammary gland epithelial cell
14
substantia nigra
13
Peyer's patch
13
excitatory neuron
13
neurosphere
13
skeletal muscle satellite cell
12
fibroblast of dermis
12
left renal cortex interstitium
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
omental fat pad
12
prostate gland
12
temporal lobe
11
ascending aorta
11
breast epithelium
11
erythroblast
11
frontal cortex
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
aorta
10
bronchial epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
kidney tubule cell
10
pancreatic stellate cell
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
9
22Rv1
9
HepG2
9
SK-N-SH
9
cardiomyocytes
9
cerebellum
9
colonic mucosa
9
mammary epithelial cell
9
parathyroid adenoma
9
progenitor cell of endocrine pancreas
9
tongue
9
trophoblast
9
vagina
8
Ammon's horn
8
NAMALWA cell
8
breast cancer cell
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
lymphoblastoid cell line
8
lymphocyte
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
putamen
8
skeletal muscle fiber
7
GM12864
7
GM12865
7
HEK293
7
IMR-90
7
SK-N-DZ
7
T47D
7
angular gyrus
7
chorion membrane
7
endometrium adenocarcinoma
7
esophagus
7
extended pluripotent stem (EPS) cells
7
eye
7
kidney glomerular epithelial cell
7
memory B cell
7
renal cortical epithelial cell
7
stomach smooth muscle
7
uterus
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CD4-positive helper T cell
6
CMK
6
Caco-2 cell
6
GM06990
6
GM08714
6
GM10266
6
HUES8
Life stage
4
embryonic
Date released
3
September, 2022
2
February, 2021
1
June, 2020
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
histone modifications
month_released!
March, 2020
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP