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Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
stem cell
Biosample term
55
HeLa-S3
39
H1-hESC
24
K562
23
endothelial cell
23
retina
21
monocyte
20
A549
20
fibroblast
20
pericyte cell
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
18
B cell
17
macrophage
15
smooth muscle cell
14
common myeloid progenitor, CD34-positive
13
excitatory neuron
12
adipocyte
12
kidney
11
T cell
11
astrocyte
11
hematopoietic multipotent progenitor cell
11
hepatocyte
11
liver
11
neural progenitor cell
11
pancreatic beta cell
11
pancreatic ductal cell
11
stomach
10
CD8-positive, alpha-beta T cell
10
adipose tissue
10
adrenal gland
10
pancreas
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pituitary stalk
10
retinal pigment epithelial cell
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
GM12878
9
natural killer cell
9
pancreatic delta cell
9
psoas muscle
9
regulatory T cell
9
spleen
8
glutamatergic neuron
8
heart left ventricle
8
islet of Langerhans
8
sigmoid colon
7
CD8-positive, alpha-beta memory T cell
7
H9
7
MCF-7
7
colon epithelial cell
7
embryonic stem cell
7
erythroblast
7
fibroblast of cardiac tissue
7
heart
7
keratinocyte
7
lymphocyte
7
osteoblast
7
skeletal muscle satellite cell
6
SGBS preadipocytes
6
T-helper 1 cell
6
coronary artery
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
gastrocnemius medialis
6
mammary gland epithelial cell
6
memory B cell
6
mesenchymal stem cell
6
mononuclear cell
6
olfactory receptor cell
6
ovary
6
small intestine
6
thyroid gland
6
tibial nerve
6
transverse colon
6
type II pneumocyte
5
HUES8
5
HepG2
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
caudate nucleus
5
chondrocyte
5
cortical cell of adrenal gland
5
foreskin keratinocyte
5
gabaergic neuron
5
heart right ventricle
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
right atrium auricular region
5
skeletal muscle fiber
5
skeletal muscle myoblast
5
thymus
5
tibial artery
4
Ammon's horn
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
CyT49
4
Peyer's patch
aorta
4
blood vessel smooth muscle cell
4
breast epithelium
4
endocrine pancreas
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
frontal cortex
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
iPSC derived cell line
4
kidney tubule cell
4
megakaryocyte
4
omental fat pad
4
pancreatic A cell
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
type B pancreatic cell
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
4
upper lobe of left lung
3
cardiac fibroblast
3
GM18507
3
GM19240
3
HAP-1
3
HCT116
3
HT-29
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
basal cell
3
bipolar neuron
3
bronchial epithelial cell
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
endocardial cell
3
endometrium adenocarcinoma
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
globus pallidus
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
lung
3
medulla oblongata
3
mesendoderm
3
mesothelial cell
3
midbrain
3
muscle of leg
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neutrophil
3
occipital lobe
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic polypeptide-secreting cell
3
plasma cell
3
plasmacytoid dendritic cell
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
schwann cell
3
skeletal muscle tissue
3
spinal cord
3
superior temporal gyrus
3
testis
3
thoracic aorta
3
trophoblast cell
3
uterus
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG08396 cell
Life stage
embryonic
Date released
1
June, 2020
1
March, 2020
1
May, 2021
Software used
1
abc
1
macs
1
nospecificsoft_customcode
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
biosample_term_name!
aorta
relevant_life_stage!
embryonic
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP