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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
56
HeLa-S3
42
H1-hESC
27
retina
26
K562
26
heart
25
endothelial cell
25
kidney
24
stomach
22
A549
22
fibroblast
22
monocyte
20
pericyte cell
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
19
brain
18
B cell
18
adrenal gland
18
neural progenitor cell
17
lung
17
macrophage
17
muscle of arm
17
small intestine
16
placenta
16
thymus
15
large intestine
15
liver
15
muscle of leg
smooth muscle cell
14
common myeloid progenitor, CD34-positive
13
adipocyte
13
excitatory neuron
13
hepatocyte
12
astrocyte
12
endothelial cell of hepatic sinusoid
12
hematopoietic multipotent progenitor cell
12
left lung
12
muscle of back
12
pancreatic ductal cell
12
retinal pigment epithelial cell
11
GM12878
11
T cell
11
adipose tissue
11
keratinocyte
11
pancreatic beta cell
11
renal pelvis
11
right kidney
10
CD8-positive, alpha-beta T cell
10
EndoC_BH1
10
MCF-7
10
embryonic stem cell
10
heart left ventricle
10
pancreas
10
pancreatic acinar cell
10
right lung
10
spinal cord
9
CD4-positive, alpha-beta memory T cell
9
breast cancer cell
9
erythroblast
9
fibroblast of cardiac tissue
9
islet of Langerhans
9
osteoblast
9
pancreatic alpha cell
9
regulatory T cell
9
spleen
8
H9
8
HepG2
8
endothelial cell of umbilical vein
8
fibroblast cell line
8
glutamatergic neuron
8
left kidney
8
pancreatic delta cell
8
pituitary stalk
8
renal cortex interstitium
7
CD8-positive, alpha-beta memory T cell
7
cardiac muscle cell
7
colon epithelial cell
7
foreskin fibroblast
7
natural killer cell
7
ovary
7
psoas muscle
7
sigmoid colon
7
skeletal muscle satellite cell
6
HUES8
6
SGBS preadipocytes
6
T-helper 1 cell
6
chondrocyte
6
coronary artery
6
dendritic cell
6
foreskin keratinocyte
6
gastrocnemius medialis
6
heart right ventricle
6
mammary gland epithelial cell
6
skin fibroblast
5
GM19240
5
IMR-90
5
Jurkat
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
bronchial epithelial cell
5
caudate nucleus
5
choroid plexus epithelial cell
5
cortical cell of adrenal gland
5
epithelial cell of prostate
5
fibroblast of dermis
5
fibroblast of lung
5
hepatic stellate cell
5
lymphocyte
5
mesenchymal stem cell
5
trophoblast cell
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
Ammon's horn
4
BE(2)-C
4
BJ cell
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
Caco-2 cell
4
CyT49
4
GM06990
4
GM12864
4
GM12865
4
GM19238
4
GM19239
4
HAP-1
4
HCT-116 cell
4
HEK293
4
HL-60
4
HT-29
4
KARPAS-422 cell
4
LoVo cell
4
MM.1S
4
NAMALWA cell
4
NT2-D1 cell
4
OCI-LY7
4
PC-9
4
Peyer's patch
4
Rh-4 cell
4
SK-N-MC
4
SK-N-SH
4
U937
4
WERI-Rb-1
4
acute myeloid leukemia
4
aorta
4
blood vessel smooth muscle cell
4
breast epithelium
4
chorion membrane
4
chorionic villus
4
dermal fibroblast
4
endocrine pancreas
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
frontal cortex
4
gabaergic neuron
4
glioblastoma multiforme cancer stem cell
4
glomerular visceral epithelial cell
4
mammary epithelial cell
4
memory B cell
4
mesendoderm
4
mononuclear cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
plasma cell
4
prostate cancer cell line
4
prostate gland
4
right atrium auricular region
4
skeletal muscle myoblast
4
thyroid gland
4
tibial nerve
4
transverse colon
3
cardiac fibroblast
3
22Rv1
3
BJAB cell
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Daoy
3
ECC-1
3
GM08714
3
GM10248
3
GM10266
3
GM12875
3
GM12891
3
GM12892
3
GM18505
3
GM18507
3
GM19099
3
GM19193
3
GM23248
3
H7-hESC
3
HAC cell
3
HBMEC cell
3
HCT116
3
HUES6
3
HuH-7
3
KBM-7
3
LHCN-M2
3
LNCAP
Life stage
1
embryonic
Date released
1
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
1
September, 2022
Software used
2
macs
1
abc
1
nospecificsoft_customcode
1
r
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
biosample_term_name!
smooth muscle cell
Showing 5 of 5 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP