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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
2
accessible chromatin
2
binding sites
2
candidate regulatory elements
2
histone modifications
1
chromatin state
Annotation Category
4
Target gene links
2
cis-regulatory elements
Annotation type Category
5
DNase-seq
2
ATAC-seq
2
H3K27ac ChIP-Seq
1
ChIP-seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
cell line
1
stem cell
Biosample term
55
HeLa-S3
40
H1-hESC
26
retina
25
heart
24
K562
24
kidney
24
stomach
22
endothelial cell
21
monocyte
20
A549
20
fibroblast
20
pigmented layer of retina
19
HFFc6
19
pericyte cell
18
CD14-positive monocyte
18
adrenal gland
18
brain
18
small intestine
17
lung
17
macrophage
17
muscle of arm
16
B cell
16
muscle of leg
16
placenta
15
large intestine
15
neural progenitor cell
15
smooth muscle cell
15
thymus
14
liver
13
left lung
13
muscle of back
12
excitatory neuron
12
right lung
11
adipocyte
11
astrocyte
11
common myeloid progenitor, CD34-positive
11
hepatocyte
11
pancreatic ductal cell
11
renal pelvis
11
right kidney
10
CD8-positive, alpha-beta T cell
10
T cell
10
adipose tissue
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
10
pancreas
10
pancreatic acinar cell
10
pancreatic beta cell
10
pituitary stalk
10
renal cortex interstitium
10
spinal cord
10
spleen
9
EndoC_BH1
9
GM12878
9
left kidney
9
natural killer cell
9
pancreatic alpha cell
9
psoas muscle
9
retinal pigment epithelial cell
8
H9
8
glutamatergic neuron
8
islet of Langerhans
8
pancreatic delta cell
8
regulatory T cell
8
sigmoid colon
8
trophoblast cell
7
MCF-7
7
embryonic stem cell
7
erythroblast
7
fibroblast of cardiac tissue
7
lymphocyte
7
ovary
6
SGBS preadipocytes
6
colon epithelial cell
6
coronary artery
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
gastrocnemius medialis
6
heart right ventricle
6
memory B cell
6
mesenchymal stem cell
6
olfactory receptor cell
6
skeletal muscle satellite cell
6
skin fibroblast
6
thyroid gland
6
tibial nerve
6
transverse colon
6
type II pneumocyte
5
CD8-positive, alpha-beta memory T cell
5
HUES8
5
HepG2
5
T-helper 1 cell
5
body of pancreas
5
caudate nucleus
5
chondrocyte
5
cortical cell of adrenal gland
5
foreskin keratinocyte
5
gabaergic neuron
5
inhibitory neuron
5
keratinocyte
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
mononuclear cell
5
muscle of trunk
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
right atrium auricular region
5
skeletal muscle fiber
5
tibial artery
4
Ammon's horn
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
CyT49
4
Peyer's patch
4
T-helper 2 cell
4
aorta
4
blood vessel smooth muscle cell
4
breast epithelium
4
cardiac muscle cell
4
chorionic villus
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
foreskin fibroblast
4
frontal cortex
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
iPSC derived cell line
4
kidney tubule cell
4
megakaryocyte
4
mesendoderm
4
omental fat pad
4
osteoblast
4
pancreatic A cell
4
skeletal muscle myoblast
4
smooth muscle cell of the esophagus
4
testis
4
trophoblast
4
type B pancreatic cell
4
type I pneumocyte
4
upper lobe of left lung
3
CD4-positive, alpha-beta memory T cell
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
SK-N-DZ
3
SK-N-SH
3
U937
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
basal cell
3
bipolar neuron
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
chorion membrane
3
ciliated cell
3
club cell
3
endocardial cell
3
endocrine pancreas
3
endometrium adenocarcinoma
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
immortal human breast epithelial cell line cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
mesothelial cell
3
midbrain
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
occipital lobe
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic polypeptide-secreting cell
3
plasma cell
3
plasmacytoid dendritic cell
3
pons
3
prostate gland
3
putamen
3
right renal cortex interstitium
Organ
2
lung
Life stage
1
embryonic
unknown
Date released
2
June, 2020
2
May, 2021
1
March, 2020
1
September, 2022
Software used
2
abc
2
macs
1
nospecificsoft_customcode
1
r
Lab
4
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
relevant_life_stage!
unknown
Showing 6 of 6 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR988JBC
released
Annotation file set
: enhancer-gene predicton of PC-9-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR109GCX
released
Annotation file set
: Accessible chromatin annotation for Lung PC-9 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP