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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
binding sites
1
chromatin state
1
histone modifications
0
accessible chromatin
Annotation Category
3
Target gene links
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
stem cell
Biosample term
55
HeLa-S3
39
H1-hESC
25
retina
23
K562
23
endothelial cell
23
heart
23
kidney
21
stomach
20
fibroblast
20
pericyte cell
20
pigmented layer of retina
19
A549
19
CD14-positive monocyte
19
HFFc6
17
adrenal gland
17
brain
17
lung
17
monocyte
17
muscle of arm
17
small intestine
16
macrophage
16
smooth muscle cell
15
muscle of leg
15
neural progenitor cell
15
placenta
14
B cell
14
common myeloid progenitor, CD34-positive
14
large intestine
14
thymus
13
excitatory neuron
13
left lung
13
liver
13
muscle of back
12
astrocyte
11
adipocyte
11
hepatocyte
11
pancreatic beta cell
11
right kidney
11
right lung
10
T cell
10
adipose tissue
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pancreatic ductal cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
left kidney
9
pancreatic delta cell
9
retinal pigment epithelial cell
9
spleen
8
GM12878
8
H9
8
glutamatergic neuron
8
pancreas
8
psoas muscle
8
spinal cord
7
CD8-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
colon epithelial cell
7
embryonic stem cell
7
erythroblast
7
islet of Langerhans
7
keratinocyte
7
lymphocyte
7
natural killer cell
7
sigmoid colon
7
skeletal muscle satellite cell
7
trophoblast cell
6
MCF-7
6
coronary artery
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
fibroblast of cardiac tissue
6
heart right ventricle
6
mesenchymal stem cell
6
mononuclear cell
6
olfactory receptor cell
6
ovary
6
type II pneumocyte
5
SGBS preadipocytes
5
body of pancreas
5
chondrocyte
5
cortical cell of adrenal gland
5
endothelial cell of umbilical vein
5
gabaergic neuron
5
gastrocnemius medialis
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
muscle of trunk
5
osteoblast
5
pancreatic stellate cell
5
regulatory T cell
5
skeletal muscle fiber
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
HepG2
4
aorta
4
blood vessel smooth muscle cell
4
cardiac muscle cell
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
iPSC derived cell line
4
megakaryocyte
4
memory B cell
4
omental fat pad
4
pancreatic A cell
4
right atrium auricular region
4
skeletal muscle myoblast
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
tibial artery
4
type B pancreatic cell
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
3
cardiac fibroblast
3
Ammon's horn
3
CD4-positive helper T cell
3
HCT116
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
basal cell
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
chorion membrane
3
ciliated cell
3
club cell
3
endocardial cell
3
endometrium adenocarcinoma
3
enteric neuron
3
enterocyte
3
epithelial cell of prostate
3
esophagus
3
foreskin fibroblast
3
frontal cortex
3
glomerular visceral epithelial cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
mesendoderm
3
mesothelial cell
3
naive B cell
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
neutrophil
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic polypeptide-secreting cell
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle tissue
3
testis
3
thoracic aorta
3
trophoblast
3
upper lobe of left lung
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
Life stage
1
embryonic
Date released
June, 2020
1
March, 2020
1
May, 2021
1
September, 2022
Software used
1
abc
1
nospecificsoft_customcode
1
r
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
month_released!
June, 2020
Showing 3 of 3 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP