Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
target gene predictions
2
candidate regulatory elements
2
histone modifications
1
accessible chromatin
1
binding sites
1
chromatin state
Annotation Category
6
Target gene links
1
cis-regulatory elements
Annotation type Category
4
HiC
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
pCHi-C
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
4
GRCh38
Organism
7
Homo sapiens
Biosample type
4
cell line
3
in vitro differentiated cells
Biosample term
56
HeLa-S3
41
H1-hESC
25
K562
21
A549
21
heart
21
stomach
19
CD14-positive monocyte
19
HFFc6
17
brain
16
adrenal gland
16
lung
16
muscle of arm
16
placenta
16
small intestine
15
kidney
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
13
left lung
13
muscle of back
13
thymus
11
hematopoietic multipotent progenitor cell
11
right lung
10
GM12878
10
liver
10
pericyte cell
10
pituitary stalk
10
right kidney
10
spinal cord
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
MCF-7
9
breast cancer cell
9
endothelial cell
9
keratinocyte
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
H9
8
adipose tissue
8
neural progenitor cell
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
foreskin fibroblast
7
lymphocyte
7
melanoma
7
mononuclear cell
7
psoas muscle
7
trophoblast cell
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
fibroblast
6
fibroblast cell line
6
fibroblast of lung
6
heart left ventricle
6
mammary gland epithelial cell
6
olfactory receptor cell
6
sigmoid colon
6
smooth muscle cell
5
HUES8
5
HepG2
5
body of pancreas
5
cardiac muscle cell
5
fibroblast of cardiac tissue
5
fibroblast of dermis
5
foreskin keratinocyte
5
gastrocnemius medialis
5
hepatocyte
5
iPSC derived cell line
5
mammary epithelial cell
5
muscle of trunk
5
natural killer cell
5
osteoblast
5
ovary
5
pancreas
5
pancreatic ductal cell
5
prostate cancer cell line
5
regulatory T cell
5
skeletal muscle myoblast
5
thyroid gland
5
transverse colon
4
CD8-positive, alpha-beta T cell
4
CyT49
4
GM19238
4
GM19239
4
GM19240
4
IMR-90
4
Jurkat
4
SK-N-SH
4
T cell
4
astrocyte
4
bronchial epithelial cell
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
epithelial cell of prostate
4
glioblastoma multiforme cancer stem cell
4
heart right ventricle
4
layer of hippocampus
4
macrophage
4
mesenchymal stem cell
4
neuroblastoma cell
4
neuronal stem cell
4
pancreatic delta cell
4
prostate gland
4
retina
4
skin fibroblast
4
upper lobe of left lung
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
BJAB cell
3
Caco-2 cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM18505
3
GM19099
3
GM19193
3
HAP-1
3
HCT-116 cell
3
HCT116
3
HEK293
3
HL-60
3
HT-29
3
KARPAS-422 cell
3
LoVo cell
3
MCF 10A cell
3
MM.1S
3
NAMALWA cell
3
NT2-D1 cell
3
OCI-LY7
3
PC-9
3
Peyer's patch
3
SK-N-MC
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
THP-1
3
Tumor-derived cell line
3
U937
3
WERI-Rb-1
3
acute myeloid leukemia
3
aorta
3
breast epithelium
3
caudate nucleus
3
chorion membrane
3
choroid plexus epithelial cell
3
coronary artery
3
dermal fibroblast
3
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
embryonic stem cell
3
endodermal cell
3
endometrium adenocarcinoma
3
erythroblast
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
immortal human breast epithelial cell line cell
3
liposarcoma
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
monocyte
3
myotube
3
naive T cell
3
neurosphere
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
retinal pigment epithelial cell
3
synovial sarcoma cell
3
testis
3
tibial nerve
3
triple-negative breast cancer
3
trophoblast
2
A673
2
Brodmann (1909) area 46
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO-320 cell
2
DND-41 cell
2
Daoy
2
ECC-1
2
EndoC_BH1
Organ
4
embryo
Life stage
1
embryonic
Date released
4
February, 2024
1
February, 2021
1
May, 2021
1
September, 2022
Software used
1
abc
1
macs
1
r
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type_category!
pCHi-C
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR545HRQ
released
Annotation file set
: Target gene predictions from Hi-C on hESC differentiated to pancreatic endoderm. pancreatic endoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR067ZYX
released
Annotation file set
: Target gene predictions from Hi-C on hESC differentiated to pancreatic endoderm. gut endoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR976RDI
released
Annotation file set
: Target gene predictions from Hi-C on hESC differentiated to pancreatic endoderm. definitive endoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR412OXF
released
Annotation file set
: Target gene predictions from Hi-C on hESC differentiated to pancreatic endoderm. undifferentiated
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP