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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
pCHi-C
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
stem cell
Biosample term
59
HeLa-S3
59
stomach
57
heart
50
lung
49
muscle of arm
45
brain
45
small intestine
43
adrenal gland
43
kidney
41
muscle of back
40
common myeloid progenitor, CD34-positive
40
large intestine
40
muscle of leg
40
placenta
39
A549
39
H1-hESC
39
left lung
33
right lung
33
thymus
30
right kidney
29
K562
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
left kidney
23
B cell
23
CD4-positive, alpha-beta memory T cell
22
liver
22
spleen
21
spinal cord
19
HFFc6
18
heart left ventricle
16
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
14
H9
14
MCF-7
14
adipose tissue
14
psoas muscle
14
trophoblast cell
13
mononuclear cell
13
ovary
12
CD14-positive monocyte
12
body of pancreas
12
chorionic villus
12
gastrocnemius medialis
12
muscle of trunk
12
thyroid gland
12
transverse colon
11
endocrine pancreas
11
heart right ventricle
10
CD4-positive, alpha-beta T cell
10
Peyer's patch
10
neural progenitor cell
10
neurosphere
10
testis
10
upper lobe of left lung
9
GM12878
9
T-helper 1 cell
9
endothelial cell of umbilical vein
9
fibroblast of lung
9
foreskin fibroblast
9
layer of hippocampus
9
natural killer cell
9
pancreas
9
retina
9
skeletal muscle tissue
9
tibial nerve
8
CD8-positive, alpha-beta T cell
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
aorta
8
caudate nucleus
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
lymphocyte
8
regulatory T cell
8
right renal pelvis
7
breast epithelium
7
cardiac muscle cell
7
esophagus
7
esophagus muscularis mucosa
7
fibroblast of dermis
7
mesenchymal stem cell
7
neutrophil
7
omental fat pad
7
parathyroid adenoma
7
right renal cortex interstitium
7
substantia nigra
7
temporal lobe
7
trophoblast
6
22Rv1
6
SK-N-DZ
6
SK-N-SH
6
WI38
6
adipocyte
6
angular gyrus
6
ascending aorta
6
bronchial epithelial cell
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
eye
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
mammary gland epithelial cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
olfactory receptor cell
6
prostate gland
6
skeletal muscle myoblast
6
stomach smooth muscle
6
thoracic aorta
6
tongue
6
vagina
5
HCT116
5
LNCaP clone FGC
5
T47D
5
cerebellum
5
coronary artery
5
foreskin melanocyte
5
hepatocyte
5
keratinocyte
5
kidney tubule cell
5
limb
5
mesodermal cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
right atrium auricular region
5
subcutaneous abdominal adipose tissue
5
tibial artery
5
urinary bladder
4
Ammon's horn
4
Brodmann (1909) area 46
4
CyT49
4
HEK293
4
HUES8
4
HepG2
4
NAMALWA cell
4
T-cell
4
dermis lymphatic vessel endothelial cell
4
frontal cortex
4
iPSC derived cell line
4
lung microvascular endothelial cell
4
mesendoderm
4
muscle cell
4
neural cell
4
peripheral blood mononuclear cell
4
right cardiac atrium
4
skin fibroblast
4
uterus
3
A172
3
A673
3
ACC112
3
ACHN
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
GM23338
3
H4
3
H54
3
HAP-1
3
HL-60
3
HS-27A
3
HS-5
Life stage
3
embryonic
Date released
2
September, 2022
1
February, 2021
1
March, 2020
Software used
2
r
1
encode-ccres
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP