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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
89
monocyte
58
HeLa-S3
42
H1-hESC
42
heart
41
stomach
38
A549
37
brain
36
CD8-positive, alpha-beta T cell
33
lung
32
kidney
32
muscle of arm
32
small intestine
31
K562
31
adrenal gland
31
placenta
29
muscle of leg
28
large intestine
27
common myeloid progenitor, CD34-positive
26
left lung
26
muscle of back
26
thymus
25
neural progenitor cell
23
CD14-positive monocyte
22
right lung
21
hematopoietic multipotent progenitor cell
21
liver
20
B cell
20
right kidney
19
HFFc6
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
renal cortex interstitium
18
renal pelvis
16
heart left ventricle
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
14
adipose tissue
13
MCF-7
13
adipocyte
13
trophoblast cell
12
mononuclear cell
12
spleen
11
GM12878
11
breast cancer cell
11
keratinocyte
11
sigmoid colon
10
HepG2
10
heart right ventricle
10
hepatocyte
10
psoas muscle
9
H9
9
T cell
9
body of pancreas
9
endothelial cell of umbilical vein
9
fibroblast of cardiac tissue
9
foreskin keratinocyte
9
gastric cancer cell
9
gastrocnemius medialis
9
lymphocyte
9
pancreas
9
pericyte cell
9
thyroid gland
8
Rhabdomyosarcoma
8
aorta
8
caudate nucleus
8
chorionic villus
8
embryonic stem cell
8
endocrine pancreas
8
endothelial cell
8
fibroblast of lung
8
layer of hippocampus
8
mammary gland epithelial cell
8
muscle of trunk
8
natural killer cell
8
ovary
8
pituitary stalk
7
B-lymphoblastoid cell line
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
fibroblast of dermis
7
foreskin fibroblast
7
left cardiac atrium
7
mature neutrophil
7
mesenchymal stem cell
7
neuroblastoma cell
7
retina
7
skeletal muscle tissue
7
testis
6
CD4-positive, alpha-beta T cell
6
Chondroid Chordoma
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
angular gyrus
6
astrocyte
6
bronchial epithelial cell
6
chorion membrane
6
colonic mucosa
6
coronary artery
6
dendritic cell
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
fibroblast
6
hESC cell
6
immortal human breast epithelial cell line cell
6
temporal lobe
6
tibial nerve
6
transverse colon
6
upper lobe of left lung
5
22Rv1
5
CD14-positive, CD16-negative classical monocyte
5
CyT49
5
KARPAS-422 cell
5
NAMALWA cell
5
SK-N-DZ
5
SK-N-SH
5
T-cell acute lymphoblastic leukemia
5
alternatively activated macrophage
5
ascending aorta
5
breast epithelium
5
cardiac muscle cell
5
cerebellum
5
cingulate gyrus
5
colon epithelial cell
5
dermis lymphatic vessel endothelial cell
5
duodenal mucosa
5
endodermal cell
5
esophagus
5
liposarcoma
5
mammary epithelial cell
5
naive T cell
5
osteoblast
5
regulatory T cell
5
skeletal muscle myoblast
5
smooth muscle cell
4
Brodmann (1909) area 46
4
GM18507
4
GM19238
4
GM19239
4
GM19240
4
H7-hESC
4
HAP-1
4
HCT116
4
HT-29
4
HUES8
4
IMR-90
4
Jurkat
4
LNCaP clone FGC
4
LoVo cell
4
MM.1S
4
OCI-LY7
4
PC-9
4
T47D
4
dermis blood vessel endothelial cell
4
erythroblast
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast of breast
4
frontal cortex
4
inflammatory macrophage
4
islet of Langerhans
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
luminal epithelial cell of mammary gland
4
macrophage
4
mesendoderm
4
neuroblastoma cell line
4
neutrophil
4
olfactory receptor cell
4
skeletal muscle satellite cell
4
squamous cell lung carcinoma
4
substantia nigra
4
thoracic aorta
3
A673
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
Ammon's horn
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CD4-positive helper T cell
3
CMK
3
Caco-2 cell
3
Ewing sarcoma
3
GM06990
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM23248
3
HEK293
3
HK-2 cell
Life stage
2
embryonic
Date released
2
September, 2022
1
February, 2021
1
March, 2020
1
May, 2021
Software used
1
abc
1
chromhmm
1
macs
1
nospecificsoft_customcode
1
r
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP