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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
89
monocyte
55
HeLa-S3
40
H1-hESC
35
CD8-positive, alpha-beta T cell
24
K562
22
stomach
20
A549
20
heart
20
neural progenitor cell
19
CD14-positive monocyte
19
HFFc6
19
brain
17
placenta
16
adrenal gland
16
kidney
16
lung
16
muscle of arm
16
small intestine
15
large intestine
14
common myeloid progenitor, CD34-positive
14
muscle of leg
13
left lung
13
muscle of back
13
thymus
12
B cell
11
breast cancer cell
11
hematopoietic multipotent progenitor cell
11
right lung
10
liver
10
pericyte cell
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
GM12878
9
gastric cancer cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
H9
8
MCF-7
8
Rhabdomyosarcoma
8
endothelial cell
8
hepatocyte
8
keratinocyte
8
lymphocyte
8
neuroblastoma cell
7
CD8-positive, alpha-beta memory T cell
7
HepG2
7
adipocyte
7
adipose tissue
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
natural killer cell
7
trophoblast cell
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
dendritic cell
6
fibroblast
6
fibroblast of cardiac tissue
6
hESC cell
6
heart left ventricle
6
liposarcoma
6
mononuclear cell
6
neuroblastoma cell line
6
olfactory receptor cell
6
sigmoid colon
6
smooth muscle cell
6
spleen
6
squamous cell lung carcinoma
5
CyT49
5
T cell
5
T-cell acute lymphoblastic leukemia
5
astrocyte
5
body of pancreas
5
foreskin fibroblast
5
foreskin keratinocyte
5
gastrocnemius medialis
5
macrophage
5
mammary gland epithelial cell
5
melanoma cell
5
muscle of trunk
5
osteosarcoma
5
ovary
5
pancreatic ductal cell
5
psoas muscle
5
regulatory T cell
4
HUES8
4
Jurkat
4
bronchial epithelial cell
4
cardiac muscle cell
4
caudate nucleus
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
iPSC derived cell line
4
layer of hippocampus
4
mammary epithelial cell
4
mesenchymal stem cell
4
neuronal stem cell
4
osteoblast
4
pancreas
4
pancreatic acinar cell
4
pancreatic delta cell
4
prostate gland
4
retina
4
rhabdomyosarcoma cell
4
skeletal muscle myoblast
4
skeletal muscle tissue
4
skin fibroblast
4
thyroid gland
4
transverse colon
3
22Rv1
3
CD4-positive helper T cell
3
CD4-positive, alpha-beta T cell
3
Ewing sarcoma
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
Peyer's patch
3
SK-N-DZ
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
U937
3
acute myeloid leukemia
3
breast epithelium
3
cerebellum
3
chorion membrane
3
colonic mucosa
3
coronary artery
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
endodermal cell
3
endometrium adenocarcinoma
3
endothelial cell of umbilical vein
3
esophageal squamous cell carcinoma
3
glioblastoma cell
3
glioma cell
3
heart right ventricle
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
luminal epithelial cell of mammary gland
3
lymphoblast
3
lymphoblastoid cell line
3
mesendoderm
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal adenocarcinoma
3
substantia nigra
3
testis
3
upper lobe of left lung
2
A673
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO205
2
Caco-2 cell
2
GM06990
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM18505
2
GM19099
2
GM19193
2
GM23248
2
HCT-116 cell
2
HEK293
2
HK-2 cell
Life stage
1
embryonic
Date released
1
February, 2021
March, 2020
1
May, 2021
1
September, 2022
Software used
1
abc
1
macs
1
r
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
biosample_term_name!
GM18507
month_released!
March, 2020
Showing 3 of 3 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP