Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
histone modifications
3
target gene predictions
2
accessible chromatin
2
binding sites
2
candidate regulatory elements
1
chromatin state
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
cell line
1
stem cell
Biosample term
89
monocyte
62
stomach
60
HeLa-S3
58
heart
50
lung
49
muscle of arm
48
brain
46
small intestine
45
adrenal gland
45
kidney
43
placenta
42
CD8-positive, alpha-beta T cell
42
large intestine
41
A549
41
H1-hESC
41
common myeloid progenitor, CD34-positive
41
muscle of back
41
muscle of leg
39
left lung
35
thymus
33
right lung
31
K562
30
hematopoietic multipotent progenitor cell
30
right kidney
29
renal cortex interstitium
28
renal pelvis
27
CD14-positive monocyte
27
left kidney
26
B cell
26
neural progenitor cell
25
liver
23
CD4-positive, alpha-beta memory T cell
23
spinal cord
22
spleen
19
HFFc6
19
heart left ventricle
17
MCF-7
16
foreskin keratinocyte
16
sigmoid colon
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
adipose tissue
14
ovary
14
psoas muscle
13
body of pancreas
13
mononuclear cell
13
natural killer cell
13
transverse colon
12
chorionic villus
12
foreskin fibroblast
12
gastrocnemius medialis
12
muscle of trunk
12
thyroid gland
11
CD4-positive, alpha-beta T cell
11
GM12878
11
adipocyte
11
breast cancer cell
11
endocrine pancreas
10
HepG2
10
Peyer's patch
10
cardiac muscle cell
10
endothelial cell of umbilical vein
10
fibroblast of lung
10
heart right ventricle
10
hepatocyte
10
keratinocyte
10
skeletal muscle tissue
10
testis
10
upper lobe of left lung
9
T cell
9
T-helper 1 cell
9
caudate nucleus
9
fibroblast of cardiac tissue
9
lymphocyte
9
neurosphere
9
regulatory T cell
8
Rhabdomyosarcoma
8
T-helper 17 cell
8
T-helper 2 cell
8
aorta
8
breast epithelium
8
bronchial epithelial cell
8
endothelial cell
8
epithelial cell of prostate
8
esophagus squamous epithelium
8
fibroblast of dermis
8
gastric cancer cell
8
layer of hippocampus
8
pancreas
8
pericyte cell
8
pituitary stalk
8
retina
8
tibial nerve
7
22Rv1
7
B-lymphoblastoid cell line
7
SK-N-DZ
7
SK-N-SH
7
astrocyte
7
colonic mucosa
7
dermis blood vessel endothelial cell
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
left renal cortex interstitium
7
lower leg skin
7
mammary gland epithelial cell
7
mesenchymal stem cell
7
neuroblastoma cell
7
neutrophil
7
right renal pelvis
7
smooth muscle cell
7
temporal lobe
6
Chondroid Chordoma
6
T-cell
6
WI38
6
angular gyrus
6
ascending aorta
6
cerebellum
6
chorion membrane
6
cingulate gyrus
6
coronary artery
6
dendritic cell
6
endodermal cell
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast
6
immortal human breast epithelial cell line cell
6
mammary epithelial cell
6
omental fat pad
6
parathyroid adenoma
6
skeletal muscle myoblast
6
substantia nigra
5
CyT49
5
HAP-1
5
HCT116
5
HEK293
5
HT-29
5
IMR-90
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-9
5
T-cell acute lymphoblastic leukemia
5
T47D
5
colon epithelial cell
5
duodenal mucosa
5
fibroblast of breast
5
hESC cell
5
left renal pelvis
5
myoepithelial cell of mammary gland
5
neuronal stem cell
5
osteoblast
5
prostate gland
5
right renal cortex interstitium
5
thoracic aorta
5
tongue
5
trophoblast
4
A673
4
Ammon's horn
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
GM06990
4
GM12864
4
GM12865
4
GM12875
4
GM18507
4
GM19238
4
GM19239
4
GM19240
4
GM23248
4
H7-hESC
4
HL-60
4
HUES8
4
Jurkat
4
KARPAS-422 cell
4
LHCN-M2
4
LNCAP
4
LoVo cell
4
MG63
4
OCI-LY1
4
PC-3
4
Panc1
4
RPMI8226
4
RWPE1
4
SK-MEL-5
4
SK-N-MC
4
SW480
4
WERI-Rb-1
4
bipolar neuron
4
choroid plexus epithelial cell
4
dermis lymphatic vessel endothelial cell
4
fibroblast of mammary gland
4
foreskin melanocyte
4
kidney tubule cell
4
limb
4
mesendoderm
Life stage
3
embryonic
Date released
4
February, 2021
2
September, 2022
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR342ORM
released
Annotation file set
: Histone modifications annotation for Digestive tract COLO_205 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR435UCH
released
Annotation file set
: Histone modifications annotation for Adipocyte COLO_205 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP