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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
pCHi-C
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
58
HeLa-S3
H1-hESC
41
heart
40
stomach
37
A549
34
brain
32
lung
32
muscle of arm
31
small intestine
30
K562
30
adrenal gland
30
kidney
29
muscle of leg
29
placenta
27
common myeloid progenitor, CD34-positive
27
large intestine
26
left lung
26
muscle of back
23
CD14-positive monocyte
23
thymus
22
right lung
20
hematopoietic multipotent progenitor cell
20
right kidney
19
HFFc6
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
liver
18
renal cortex interstitium
18
renal pelvis
17
B cell
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
14
heart left ventricle
13
adipose tissue
13
spleen
12
adipocyte
12
mononuclear cell
12
trophoblast cell
11
MCF-7
11
pericyte cell
11
psoas muscle
11
sigmoid colon
10
GM12878
10
pituitary stalk
9
H9
9
body of pancreas
9
endothelial cell of umbilical vein
9
gastrocnemius medialis
9
heart right ventricle
9
muscle of trunk
9
ovary
9
thyroid gland
9
transverse colon
8
T cell
8
chorionic villus
8
endocrine pancreas
8
fibroblast of lung
8
foreskin keratinocyte
8
keratinocyte
8
lymphocyte
8
natural killer cell
8
neural progenitor cell
8
smooth muscle cell
7
aorta
7
caudate nucleus
7
endothelial cell
7
fibroblast of cardiac tissue
7
fibroblast of dermis
7
layer of hippocampus
7
left cardiac atrium
7
mammary gland epithelial cell
7
mature neutrophil
7
pancreas
7
regulatory T cell
7
temporal lobe
7
tibial nerve
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
angular gyrus
6
chorion membrane
6
coronary artery
6
dendritic cell
6
endometrium adenocarcinoma
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
mesenchymal stem cell
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
retina
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
testis
6
upper lobe of left lung
5
CD14-positive, CD16-negative classical monocyte
5
CD8-positive, alpha-beta T cell
5
SK-N-SH
5
ascending aorta
5
astrocyte
5
breast epithelium
5
cingulate gyrus
5
colon epithelial cell
5
colonic mucosa
5
duodenal mucosa
5
embryonic stem cell
5
epithelial cell of prostate
5
foreskin fibroblast
5
mucosa of rectum
5
skin fibroblast
5
stomach smooth muscle
5
substantia nigra
5
thoracic aorta
5
tibial artery
4
22Rv1
4
Brodmann (1909) area 46
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HCT116
4
HUES8
4
HepG2
4
KARPAS-422 cell
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
alternatively activated macrophage
4
bronchial epithelial cell
4
cerebellum
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
esophagus
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast
4
fibroblast of breast
4
frontal cortex
4
iPSC derived cell line
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neutrophil
4
omental fat pad
4
pancreatic delta cell
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right cardiac atrium
4
right renal cortex interstitium
4
right renal pelvis
4
skeletal muscle satellite cell
4
tongue
4
trophoblast
4
urinary bladder
4
vagina
3
A673
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HT-29
3
IMR-90
3
LoVo cell
3
MM.1S
3
OCI-LY7
3
PC-9
3
Panc1
3
bipolar neuron
3
cardiac muscle cell
3
erythroblast
3
germinal matrix
3
iPS DF 19.11
3
inflammatory macrophage
3
islet of Langerhans
3
macrophage
3
mesendoderm
3
osteoblast
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
rectum smooth muscle tissue
3
type B pancreatic cell
3
uterus
2
8988T
2
A172
2
ACC112
Life stage
2
embryonic
Date released
2
September, 2022
1
May, 2021
Software used
1
abc
1
chromhmm
1
r
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
biosample_term_name!
H1-hESC
annotation_type_category!
pCHi-C
Showing 3 of 3 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP