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Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
ChIP-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
stem cell
Biosample term
55
HeLa-S3
40
H1-hESC
24
K562
22
heart
21
stomach
19
A549
19
CD14-positive monocyte
19
HFFc6
18
brain
17
adrenal gland
17
lung
17
small intestine
16
kidney
16
muscle of arm
16
muscle of leg
15
placenta
14
common myeloid progenitor, CD34-positive
14
large intestine
14
thymus
13
left lung
13
muscle of back
12
liver
11
right lung
10
B cell
10
adipocyte
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
GM12878
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
H9
8
adipose tissue
8
psoas muscle
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
endothelial cell
7
endothelial cell of umbilical vein
7
heart right ventricle
7
lymphocyte
7
mature neutrophil
7
sigmoid colon
7
smooth muscle cell
7
trophoblast cell
6
CD4-positive, alpha-beta T cell
6
CD8-positive, alpha-beta T cell
6
MCF-7
6
aorta
6
dendritic cell
6
embryonic stem cell
6
keratinocyte
6
left cardiac atrium
6
mononuclear cell
6
olfactory receptor cell
6
ovary
6
pancreas
5
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
5
body of pancreas
5
fibroblast of lung
5
gastrocnemius medialis
5
mesenchymal stem cell
5
muscle of trunk
5
natural killer cell
5
neural progenitor cell
5
temporal lobe
5
thyroid gland
5
transverse colon
4
CyT49
4
HUES8
4
HepG2
4
T cell
4
angular gyrus
4
astrocyte
4
caudate nucleus
4
chorionic villus
4
colon epithelial cell
4
coronary artery
4
endocrine pancreas
4
erythroblast
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
foreskin keratinocyte
4
hepatocyte
4
iPSC derived cell line
4
inflammatory macrophage
4
islet of Langerhans
4
layer of hippocampus
4
macrophage
4
mammary gland epithelial cell
4
pancreatic delta cell
4
regulatory T cell
4
right cardiac atrium
4
skeletal muscle myoblast
4
tibial nerve
3
HCT116
3
KARPAS-422 cell
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
T-helper 2 cell
3
ascending aorta
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
monocyte
3
mucosa of rectum
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
retina
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
skin fibroblast
3
stomach smooth muscle
3
substantia nigra
3
testis
3
thoracic aorta
3
tibial artery
3
trophoblast
3
type B pancreatic cell
3
upper lobe of left lung
2
22Rv1
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
ESC derived cell line
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
bipolar neuron
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
cerebellum
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
enteric smooth muscle cell
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
frontal cortex
2
gabaergic neuron
2
germinal matrix
2
glutamatergic neuron
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
mammary epithelial cell
Life stage
1
embryonic
Date released
1
March, 2020
1
May, 2021
1
September, 2022
Software used
1
abc
1
chromhmm
1
nospecificsoft_customcode
r
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
biosample_term_name!
T-helper 2 cell
software_used.software.name!
r
Showing 3 of 3 results
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Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP