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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
binding sites
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
59
stomach
56
heart
49
lung
49
muscle of arm
45
brain
44
small intestine
43
kidney
42
adrenal gland
41
muscle of back
40
common myeloid progenitor, CD34-positive
40
large intestine
40
muscle of leg
40
placenta
39
A549
39
left lung
33
right lung
31
thymus
30
right kidney
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
left kidney
23
CD4-positive, alpha-beta memory T cell
22
B cell
21
spinal cord
21
spleen
20
liver
16
heart left ventricle
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
15
sigmoid colon
14
MCF-7
14
trophoblast cell
13
K562
13
adipose tissue
13
mononuclear cell
12
CD14-positive monocyte
12
body of pancreas
12
chorionic villus
12
gastrocnemius medialis
12
muscle of trunk
12
ovary
12
thyroid gland
12
transverse colon
11
endocrine pancreas
11
psoas muscle
10
Peyer's patch
10
neurosphere
10
testis
10
upper lobe of left lung
9
T-helper 1 cell
9
fibroblast of lung
9
foreskin fibroblast
9
heart right ventricle
9
layer of hippocampus
natural killer cell
9
neural progenitor cell
9
retina
9
skeletal muscle tissue
9
tibial nerve
8
CD4-positive, alpha-beta T cell
8
H9
8
HeLa-S3
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
caudate nucleus
8
dermis blood vessel endothelial cell
8
endothelial cell of umbilical vein
8
esophagus squamous epithelium
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
regulatory T cell
8
right renal pelvis
7
CD8-positive, alpha-beta T cell
7
breast epithelium
7
cardiac muscle cell
7
esophagus muscularis mucosa
7
fibroblast of dermis
7
omental fat pad
7
pancreas
7
parathyroid adenoma
7
right renal cortex interstitium
7
substantia nigra
7
temporal lobe
6
22Rv1
6
SK-N-DZ
6
SK-N-SH
6
WI38
6
adipocyte
6
angular gyrus
6
aorta
6
ascending aorta
6
bronchial epithelial cell
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
esophagus
6
eye
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
mammary gland epithelial cell
6
mesenchymal stem cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
prostate gland
6
skeletal muscle myoblast
6
stomach smooth muscle
6
thoracic aorta
6
tongue
6
trophoblast
6
vagina
5
LNCaP clone FGC
5
T47D
5
cerebellum
5
coronary artery
5
foreskin melanocyte
5
hepatocyte
5
keratinocyte
5
kidney tubule cell
5
limb
5
mesodermal cell
5
right atrium auricular region
5
subcutaneous abdominal adipose tissue
5
tibial artery
5
urinary bladder
4
Brodmann (1909) area 46
4
HEK293
4
NAMALWA cell
4
T-cell
4
dermis lymphatic vessel endothelial cell
4
frontal cortex
4
lung microvascular endothelial cell
4
muscle cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neural cell
4
peripheral blood mononuclear cell
4
skin fibroblast
4
uterus
3
A172
3
A673
3
ACC112
3
ACHN
3
Ammon's horn
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM12878
3
GM23248
3
GM23338
3
H4
3
H54
3
HAP-1
3
HCT116
3
HL-60
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
HUES48
3
HUES6
3
HUES64
3
HepG2
3
IMR-90
3
KBM-7
3
KMS-11
3
KOPT-K1
3
L1-S8
3
LHCN-M2
3
Loucy
3
M059J
Life stage
3
embryonic
Date released
2
September, 2022
1
February, 2021
Software used
2
r
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
natural killer cell
Showing 3 of 3 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP