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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
binding sites
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
1
bed bed3+
1
bed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
40
heart
38
stomach
36
A549
34
brain
32
lung
32
muscle of arm
30
kidney
30
small intestine
28
adrenal gland
28
muscle of leg
28
placenta
26
common myeloid progenitor, CD34-positive
26
large intestine
26
left lung
26
muscle of back
22
right lung
22
thymus
20
hematopoietic multipotent progenitor cell
20
right kidney
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
renal cortex interstitium
18
renal pelvis
16
B cell
16
liver
14
CD8-positive, alpha-beta memory T cell
14
spinal cord
13
K562
13
heart left ventricle
12
adipose tissue
12
mononuclear cell
12
spleen
10
MCF-7
10
sigmoid colon
10
trophoblast cell
8
CD14-positive monocyte
8
T cell
8
adipocyte
8
body of pancreas
8
chorionic villus
8
endocrine pancreas
8
foreskin keratinocyte
8
gastrocnemius medialis
8
heart right ventricle
8
muscle of trunk
8
neural progenitor cell
8
ovary
8
psoas muscle
8
thyroid gland
8
transverse colon
7
caudate nucleus
7
endothelial cell of umbilical vein
7
fibroblast of lung
7
layer of hippocampus
7
left cardiac atrium
7
mature neutrophil
7
temporal lobe
7
tibial nerve
6
HeLa-S3
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
angular gyrus
6
aorta
6
chorion membrane
6
endometrium adenocarcinoma
6
fibroblast of cardiac tissue
6
fibroblast of dermis
6
immortal human breast epithelial cell line cell
6
mammary gland epithelial cell
6
naive T cell
6
natural killer cell
6
neurosphere
6
regulatory T cell
6
retina
6
skeletal muscle tissue
6
testis
6
upper lobe of left lung
5
CD14-positive, CD16-negative classical monocyte
5
ascending aorta
5
cingulate gyrus
5
colonic mucosa
5
coronary artery
5
duodenal mucosa
5
embryonic stem cell
5
keratinocyte
5
mesenchymal stem cell
5
mucosa of rectum
5
pancreas
5
skeletal muscle myoblast
5
stomach smooth muscle
5
substantia nigra
5
thoracic aorta
5
tibial artery
4
22Rv1
4
Brodmann (1909) area 46
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
SK-N-SH
4
T47D
4
alternatively activated macrophage
4
breast epithelium
4
bronchial epithelial cell
4
cerebellum
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
epithelial cell of prostate
4
esophagus
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast of breast
4
foreskin fibroblast
4
frontal cortex
4
hepatocyte
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neutrophil
4
omental fat pad
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right cardiac atrium
4
right renal cortex interstitium
4
right renal pelvis
4
skin fibroblast
4
tongue
4
trophoblast
4
urinary bladder
4
vagina
3
CD4-positive, alpha-beta T cell
3
GM12878
3
H1-hESC
3
HepG2
3
KARPAS-422 cell
3
germinal matrix
3
inflammatory macrophage
3
islet of Langerhans
3
rectum smooth muscle tissue
3
skeletal muscle satellite cell
2
8988T
2
A172
2
A673
2
ACC112
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
AG20443
2
Ammon's horn
2
BE(2)-C
2
BJ cell
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO829
2
CWRU1
2
Caco-2 cell
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
ES-I3
2
ESC derived cell line
2
G401
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM08714
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
GM23248
Life stage
2
embryonic
Date released
2
September, 2022
Software used
1
chromhmm
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
parathyroid adenoma
Showing 2 of 2 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP