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Schema
Citing CMDGA
Clear Filters
Annotation type
8
accessible chromatin
5
target gene predictions
3
differential activity
3
gene expression
2
candidate regulatory elements
1
chromatin state
1
variant allelic effects
Annotation Category
5
Target gene links
Annotation type Category
3
snATAC-seq
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
1
bigBed narrowPeak
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
cell line
Biosample term
5
body of pancreas
5
pancreas
4
endocrine pancreas
4
pancreatic delta cell
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
type B pancreatic cell
2
Panc1
1
8988T
1
EndoC_BH1
1
HPDE6-E6E7
1
islet of Langerhans
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
Disease term
1
pancreatic ductal adenocarcinoma
Organ
5
pancreas
3
epithelium
Life stage
1
adult
1
unknown
Date released
2
January, 2021
1
February, 2021
1
May, 2021
1
September, 2022
Software used
3
cicero
1
abc
1
r
Lab
3
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
2
T1D
RFA
3
AMP
2
T1D
Showing 5 of 5 results
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Download
FileSet
DSR898MBY
released
Annotation file set
: Target gene predictions for BSS01405 Panc1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR988OGT
released
Annotation file set
: enhancer-gene predicton of Panc1-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR166ECC
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of INSlow_beta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR131NAF
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of INShigh_beta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR376KYK
released
Annotation file set
: pancreatic beta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP