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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
H3K27ac ChIP-Seq
1
pCHi-C
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
in vitro differentiated cells
Biosample term
62
heart
62
stomach
51
muscle of arm
49
lung
48
brain
47
kidney
45
small intestine
43
adrenal gland
42
muscle of leg
41
large intestine
41
muscle of back
41
placenta
40
A549
40
common myeloid progenitor, CD34-positive
39
left lung
34
right lung
32
right kidney
32
thymus
31
renal cortex interstitium
31
renal pelvis
30
hematopoietic multipotent progenitor cell
27
left kidney
24
B cell
23
CD4-positive, alpha-beta memory T cell
23
spinal cord
22
spleen
21
liver
19
heart left ventricle
16
foreskin keratinocyte
16
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
MCF-7
15
trophoblast cell
14
K562
13
adipose tissue
13
body of pancreas
13
gastrocnemius medialis
13
mononuclear cell
13
ovary
13
thyroid gland
13
transverse colon
12
CD14-positive monocyte
12
chorionic villus
12
muscle of trunk
12
pancreas
12
psoas muscle
12
retina
12
tibial nerve
11
Peyer's patch
11
caudate nucleus
11
endocrine pancreas
11
endothelial cell of umbilical vein
11
heart right ventricle
11
testis
11
upper lobe of left lung
10
T-helper 1 cell
10
foreskin fibroblast
10
left renal cortex interstitium
10
left renal pelvis
10
natural killer cell
10
neurosphere
10
regulatory T cell
10
right renal pelvis
9
T cell
9
cardiac muscle cell
9
esophagus squamous epithelium
9
fibroblast of lung
9
layer of hippocampus
9
neural progenitor cell
9
right renal cortex interstitium
9
skeletal muscle myoblast
9
skeletal muscle tissue
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta T cell
8
H9
8
HeLa-S3
8
T-helper 17 cell
8
T-helper 2 cell
8
ascending aorta
8
breast epithelium
8
dermis blood vessel endothelial cell
8
esophagus muscularis mucosa
8
fibroblast of cardiac tissue
8
hepatocyte
8
lower leg skin
8
omental fat pad
8
right atrium auricular region
8
tibial artery
7
SK-N-DZ
7
adipocyte
7
bronchial epithelial cell
7
chorion membrane
7
coronary artery
7
epithelial cell of prostate
7
eye
7
fibroblast of dermis
7
frontal cortex
7
kidney tubule cell
7
mammary gland epithelial cell
7
mesenchymal stem cell
7
parathyroid adenoma
7
prostate gland
7
substantia nigra
7
temporal lobe
7
tongue
7
trophoblast
6
22Rv1
6
SK-N-SH
6
WI38
6
angular gyrus
6
aorta
6
cerebellum
6
choroid plexus epithelial cell
6
cingulate gyrus
6
colonic mucosa
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
esophagus
6
fibroblast of breast
6
foreskin melanocyte
6
gastroesophageal sphincter
6
globus pallidus
6
glomerular endothelial cell
6
glomerular visceral epithelial cell
6
immortal human breast epithelial cell line cell
6
limb
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
osteoblast
6
putamen
6
renal cortical epithelial cell
6
skin fibroblast
6
stomach smooth muscle
6
thoracic aorta
6
urinary bladder
6
vagina
5
cardiac fibroblast
5
Ammon's horn
5
HEK293
5
LNCaP clone FGC
5
NAMALWA cell
5
T47D
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
epithelial cell of proximal tubule
5
hepatic stellate cell
5
keratinocyte
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
left cardiac atrium
5
medulla oblongata
5
mesodermal cell
5
midbrain
5
middle frontal gyrus
5
occipital lobe
5
pons
5
retinal pigment epithelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
5
uterus
4
A172
4
ACHN
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caki2
4
Daoy
4
GM04503
4
GM04504
4
GM06990
4
GM10248
4
GM10266
4
GM12864
4
GM12865
4
GM12878
4
GM23248
4
H4
4
HAP-1
4
HL-60
4
HT-29
4
HUES6
4
HepG2
4
IMR-90
4
KBM-7
4
L1-S8
4
LHCN-M2
4
M059J
4
MG63
4
MM.1S
4
OCI-LY7
4
PC-3
4
PC-9
4
RCC 7860
Life stage
3
embryonic
Date released
2
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
H3K27ac ChIP-Seq
Showing 4 of 4 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP