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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
64
stomach
63
heart
54
kidney
51
muscle of arm
49
lung
48
brain
46
small intestine
45
adrenal gland
43
muscle of leg
42
large intestine
42
placenta
41
A549
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
34
right lung
33
retina
33
thymus
32
right kidney
31
renal cortex interstitium
31
renal pelvis
30
hematopoietic multipotent progenitor cell
27
B cell
27
CD14-positive monocyte
27
left kidney
26
liver
24
spleen
23
CD4-positive, alpha-beta memory T cell
23
spinal cord
21
heart left ventricle
20
pigmented layer of retina
19
neural progenitor cell
18
monocyte
17
adipose tissue
17
sigmoid colon
16
MCF-7
16
foreskin keratinocyte
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
K562
15
hepatocyte
14
adipocyte
14
body of pancreas
14
gastrocnemius medialis
14
ovary
14
pancreas
14
tibial nerve
14
transverse colon
13
CD8-positive, alpha-beta T cell
13
mononuclear cell
13
muscle of trunk
13
psoas muscle
13
thyroid gland
12
T-helper 1 cell
12
chorionic villus
12
coronary artery
12
endothelial cell of umbilical vein
12
natural killer cell
12
regulatory T cell
11
Peyer's patch
11
cardiac muscle cell
11
caudate nucleus
11
endocrine pancreas
11
foreskin fibroblast
11
heart right ventricle
11
pericyte cell
11
retinal pigment epithelial cell
10
T-helper 17 cell
10
T-helper 2 cell
10
fibroblast of lung
10
left renal cortex interstitium
10
left renal pelvis
10
neurosphere
10
pituitary stalk
10
right atrium auricular region
10
right renal pelvis
10
skeletal muscle myoblast
10
testis
10
tibial artery
10
upper lobe of left lung
9
CD4-positive, alpha-beta T cell
9
EndoC_BH1
9
H9
9
HeLa-S3
9
T cell
9
breast epithelium
9
esophagus squamous epithelium
9
fibroblast of cardiac tissue
9
layer of hippocampus
9
omental fat pad
9
osteoblast
9
skeletal muscle tissue
8
ascending aorta
8
dermis blood vessel endothelial cell
8
epithelial cell of prostate
8
esophagus muscularis mucosa
8
fibroblast of dermis
8
keratinocyte
8
lower leg skin
8
mammary gland epithelial cell
8
mesenchymal stem cell
8
right renal cortex interstitium
8
smooth muscle cell
7
SK-N-DZ
7
SK-N-SH
7
astrocyte
7
bronchial epithelial cell
7
chorion membrane
7
endothelial cell
7
eye
7
frontal cortex
7
glomerular visceral epithelial cell
7
islet of Langerhans
7
kidney tubule cell
7
parathyroid adenoma
7
prostate gland
7
skin fibroblast
7
temporal lobe
7
thoracic aorta
6
22Rv1
6
CD4-positive helper T cell
6
HepG2
6
SGBS preadipocytes
6
T-cell
6
WI38
6
angular gyrus
6
aorta
6
cerebellum
6
choroid plexus epithelial cell
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
embryonic stem cell
6
endodermal cell
6
endometrium adenocarcinoma
6
esophagus
6
fibroblast of breast
6
foreskin melanocyte
6
gastroesophageal sphincter
6
globus pallidus
6
glomerular endothelial cell
6
glutamatergic neuron
6
immortal human breast epithelial cell line cell
6
kidney glomerular epithelial cell
6
limb
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
putamen
6
renal cortical epithelial cell
6
substantia nigra
6
tongue
5
cardiac fibroblast
5
Ammon's horn
5
GM12878
5
HAP-1
5
HEK293
5
HT-29
5
IMR-90
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-9
5
T47D
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
bipolar neuron
5
chondrocyte
5
colon epithelial cell
5
epithelial cell of proximal tubule
5
hepatic stellate cell
5
kidney epithelial cell
5
left cardiac atrium
5
mammary epithelial cell
5
medulla oblongata
5
mesendoderm
5
mesodermal cell
5
midbrain
5
middle frontal gyrus
5
occipital lobe
5
pons
5
stomach smooth muscle
5
trophoblast
5
urinary bladder
5
uterus
4
A172
4
A673
4
ACHN
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caki2
4
Daoy
4
GM04503
4
GM04504
Life stage
3
embryonic
Date released
2
September, 2022
1
February, 2021
1
June, 2020
1
May, 2021
Software used
2
r
1
abc
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP