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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
64
stomach
62
heart
51
muscle of arm
50
lung
48
brain
47
kidney
47
small intestine
46
adrenal gland
43
muscle of leg
42
large intestine
42
placenta
41
A549
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
35
thymus
34
right lung
32
right kidney
31
renal cortex interstitium
31
renal pelvis
30
hematopoietic multipotent progenitor cell
27
CD14-positive monocyte
27
left kidney
26
B cell
24
spinal cord
24
spleen
23
CD4-positive, alpha-beta memory T cell
23
liver
20
heart left ventricle
18
sigmoid colon
17
trophoblast cell
16
MCF-7
16
foreskin keratinocyte
15
CD8-positive, alpha-beta memory T cell
15
K562
15
adipose tissue
15
ovary
14
body of pancreas
14
gastrocnemius medialis
14
pancreas
14
psoas muscle
14
thyroid gland
14
transverse colon
13
mononuclear cell
13
muscle of trunk
12
chorionic villus
12
endothelial cell of umbilical vein
12
heart right ventricle
12
retina
12
tibial nerve
11
CD8-positive, alpha-beta T cell
11
Peyer's patch
11
adipocyte
11
caudate nucleus
11
endocrine pancreas
11
foreskin fibroblast
11
natural killer cell
11
testis
11
upper lobe of left lung
10
CD4-positive, alpha-beta T cell
10
T-helper 1 cell
10
cardiac muscle cell
10
fibroblast of lung
10
left renal cortex interstitium
10
left renal pelvis
10
neural progenitor cell
10
neurosphere
10
pituitary stalk
10
regulatory T cell
10
right renal pelvis
10
skeletal muscle myoblast
9
H9
9
HeLa-S3
9
T cell
9
breast epithelium
9
esophagus squamous epithelium
9
hepatocyte
9
layer of hippocampus
9
mesenchymal stem cell
9
right renal cortex interstitium
9
skeletal muscle tissue
8
T-helper 17 cell
8
T-helper 2 cell
8
ascending aorta
8
coronary artery
8
dermis blood vessel endothelial cell
8
epithelial cell of prostate
8
esophagus muscularis mucosa
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
lower leg skin
8
omental fat pad
8
right atrium auricular region
8
tibial artery
8
trophoblast
7
SK-N-DZ
7
SK-N-SH
7
aorta
7
bronchial epithelial cell
7
chorion membrane
7
esophagus
7
eye
7
frontal cortex
7
kidney tubule cell
7
mammary gland epithelial cell
7
neutrophil
7
osteoblast
7
parathyroid adenoma
7
prostate gland
7
substantia nigra
7
temporal lobe
7
tongue
6
22Rv1
6
Ammon's horn
6
HepG2
6
T-cell
6
WI38
6
angular gyrus
6
cerebellum
6
choroid plexus epithelial cell
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
fibroblast of breast
6
foreskin melanocyte
6
gastroesophageal sphincter
6
globus pallidus
6
glomerular endothelial cell
6
glomerular visceral epithelial cell
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
limb
6
mesendoderm
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
putamen
6
renal cortical epithelial cell
6
skin fibroblast
6
stomach smooth muscle
6
thoracic aorta
6
urinary bladder
6
uterus
6
vagina
5
cardiac fibroblast
5
GM12878
5
HAP-1
5
HEK293
5
HT-29
5
IMR-90
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-9
5
T47D
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
bipolar neuron
5
epithelial cell of proximal tubule
5
hepatic stellate cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
left cardiac atrium
5
mammary epithelial cell
5
medulla oblongata
5
mesodermal cell
5
midbrain
5
middle frontal gyrus
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
occipital lobe
5
pons
5
retinal pigment epithelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
4
A172
4
A673
4
ACHN
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caki2
4
Daoy
4
GM04503
4
GM04504
4
GM06990
4
GM10248
4
GM10266
4
GM12864
4
GM12865
4
GM23248
4
H1-hESC
4
H4
Life stage
3
embryonic
Date released
2
September, 2022
1
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
encode-ccres
1
macs
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
Showing 6 of 6 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP