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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
61
stomach
60
heart
51
muscle of arm
50
lung
47
brain
46
kidney
46
small intestine
45
adrenal gland
42
muscle of leg
41
common myeloid progenitor, CD34-positive
41
large intestine
41
muscle of back
41
placenta
40
A549
39
left lung
34
thymus
33
right lung
32
right kidney
31
renal cortex interstitium
30
renal pelvis
29
hematopoietic multipotent progenitor cell
27
CD14-positive monocyte
27
left kidney
24
B cell
23
CD4-positive, alpha-beta memory T cell
23
spleen
22
liver
22
spinal cord
20
heart left ventricle
17
sigmoid colon
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
MCF-7
15
adipose tissue
15
foreskin keratinocyte
14
K562
14
body of pancreas
14
ovary
13
gastrocnemius medialis
13
mononuclear cell
13
muscle of trunk
13
psoas muscle
13
thyroid gland
13
transverse colon
12
chorionic villus
12
heart right ventricle
12
pancreas
11
endocrine pancreas
11
endothelial cell of umbilical vein
11
retina
11
tibial nerve
10
CD4-positive, alpha-beta T cell
10
CD8-positive, alpha-beta T cell
10
Peyer's patch
10
adipocyte
10
cardiac muscle cell
10
caudate nucleus
10
fibroblast of lung
10
foreskin fibroblast
10
left renal cortex interstitium
10
left renal pelvis
10
natural killer cell
10
neural progenitor cell
10
neurosphere
10
pituitary stalk
10
right renal pelvis
10
testis
10
upper lobe of left lung
9
H9
9
HeLa-S3
9
T-helper 1 cell
9
layer of hippocampus
9
right renal cortex interstitium
9
skeletal muscle myoblast
9
skeletal muscle tissue
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
ascending aorta
8
breast epithelium
8
coronary artery
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
hepatocyte
8
lower leg skin
8
mesenchymal stem cell
8
omental fat pad
8
regulatory T cell
7
SK-N-SH
7
aorta
7
epithelial cell of prostate
7
esophagus
7
esophagus muscularis mucosa
7
neutrophil
7
parathyroid adenoma
7
right atrium auricular region
7
substantia nigra
7
temporal lobe
7
tibial artery
7
trophoblast
6
22Rv1
6
SK-N-DZ
6
T-cell
6
WI38
6
angular gyrus
6
bronchial epithelial cell
6
cerebellum
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
eye
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
frontal cortex
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
kidney tubule cell
6
mammary gland epithelial cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
prostate gland
6
stomach smooth muscle
6
thoracic aorta
6
tongue
6
vagina
5
cardiac fibroblast
5
Ammon's horn
5
HepG2
5
LNCaP clone FGC
5
T47D
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
choroid plexus epithelial cell
5
epithelial cell of proximal tubule
5
foreskin melanocyte
5
globus pallidus
5
glomerular endothelial cell
5
glomerular visceral epithelial cell
5
kidney epithelial cell
5
left cardiac atrium
5
limb
5
mesendoderm
5
mesodermal cell
5
middle frontal gyrus
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
osteoblast
5
putamen
5
renal cortical epithelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
subcutaneous abdominal adipose tissue
5
urinary bladder
5
uterus
4
A673
4
Brodmann (1909) area 46
4
GM12878
4
HAP-1
4
HEK293
4
HT-29
4
IMR-90
4
MM.1S
4
NAMALWA cell
4
OCI-LY7
4
PC-9
4
Panc1
4
astrocyte
4
bipolar neuron
4
brain microvascular endothelial cell
4
cerebellar cortex
4
dermis lymphatic vessel endothelial cell
4
hepatic stellate cell
4
iPS DF 19.11
4
kidney capillary endothelial cell
4
kidney glomerular epithelial cell
4
lung microvascular endothelial cell
4
mammary epithelial cell
4
medulla oblongata
4
midbrain
4
muscle cell
4
neural cell
4
occipital lobe
4
peripheral blood mononuclear cell
4
pons
4
retinal pigment epithelial cell
4
right cardiac atrium
4
skin fibroblast
4
superior temporal gyrus
3
A172
3
ACC112
3
ACHN
3
C4-2B
Life stage
3
embryonic
Date released
2
September, 2022
1
February, 2021
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
month_released!
June, 2020
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP