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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
Annotation Category
cis-regulatory elements
3
Target gene links
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
stem cell
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
22
heart
21
stomach
19
A549
19
CD14-positive monocyte
19
HFFc6
17
adrenal gland
17
brain
17
lung
17
muscle of arm
17
small intestine
16
kidney
16
liver
15
placenta
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
12
adipose tissue
12
endothelial cell
12
islet of Langerhans
12
smooth muscle cell
11
right lung
10
B cell
10
body of pancreas
10
fibroblast
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
coronary artery
9
heart left ventricle
9
left kidney
9
tibial nerve
8
GM12878
8
H9
8
adipocyte
8
neutrophil
8
psoas muscle
8
right atrium auricular region
8
spinal cord
8
spleen
8
subcutaneous adipose tissue
8
tibial artery
7
CD8-positive, alpha-beta memory T cell
7
ascending aorta
7
caudate nucleus
7
frontal cortex
7
lymphocyte
7
macrophage
7
mesenchymal stem cell
7
monocyte
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
sigmoid colon
7
trophoblast cell
6
Ammon's horn
6
MCF-7
6
T cell
6
cerebellum
6
dendritic cell
6
heart right ventricle
6
hepatocyte
6
keratinocyte
6
mononuclear cell
6
olfactory receptor cell
6
omental fat pad
6
ovary
6
pancreas
6
substantia nigra
5
CD8-positive, alpha-beta T cell
5
cerebellum (Hemisphere)
5
gastrocnemius medialis
5
mammary gland epithelial cell
5
muscle of trunk
5
natural killer cell
5
neural progenitor cell
5
pancreatic delta cell
5
putamen
5
right lobe of liver
5
skeletal muscle tissue
5
thyroid gland
5
transverse colon
4
C1 segment of cervical spinal cord
4
CyT49
4
HUES8
4
amygdala
4
anterior cingulate cortex
4
aorta
4
astrocyte
4
cardiac muscle cell
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
chorionic villus
4
colon epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
gastrocnemius medialis(Muscle - Skeletal)
4
hypothalamus
4
iPSC derived cell line
4
left ventricle myocardium
4
nucleus accumbens
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic ductal cell
4
regulatory T cell
4
retina
4
skeletal muscle fiber
4
type I muscle cell
4
type II muscle cell
3
CD4-positive, alpha-beta T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
basal cell
3
breast epithelium
3
chorion membrane
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
esophagus
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
left renal pelvis
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
myofibroblast cell
3
naive T cell
3
neurosphere
3
pancreatic A cell
3
right renal pelvis
3
skeletal muscle myoblast
3
skeletal muscle satellite cell
3
skin fibroblast
3
testis
3
thoracic aorta
3
trophoblast
3
type B pancreatic cell
3
type II pneumocyte
3
upper lobe of left lung
2
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
EndoC_BH1
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MIN6
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
Schwann cell
2
T-cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
angular gyrus
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
bipolar neuron
2
blood
2
blood vessel smooth muscle cell
Life stage
1
embryonic
Date released
1
March, 2020
1
May, 2021
1
September, 2022
Software used
1
abc
1
nospecificsoft_customcode
1
r
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
annotation_category!
cis-regulatory elements
Showing 3 of 3 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP