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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
86
heart
83
stomach
72
kidney
67
brain
67
muscle of arm
66
lung
64
HeLa-S3
62
small intestine
61
A549
60
adrenal gland
58
muscle of leg
57
placenta
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
47
thymus
45
H1-hESC
45
right lung
43
liver
41
hematopoietic multipotent progenitor cell
41
right kidney
40
B cell
40
K562
40
renal cortex interstitium
40
renal pelvis
37
retina
36
left kidney
33
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
spleen
31
CD14-positive monocyte
31
heart left ventricle
30
endothelial cell
28
adipose tissue
28
fibroblast
28
neural progenitor cell
26
monocyte
24
MCF-7
24
adipocyte
24
smooth muscle cell
23
islet of Langerhans
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
body of pancreas
22
pericyte cell
22
tibial nerve
22
trophoblast cell
21
foreskin keratinocyte
20
T cell
20
hepatocyte
20
macrophage
20
mononuclear cell
20
pancreas
20
pigmented layer of retina
20
psoas muscle
19
HFFc6
18
CD8-positive, alpha-beta T cell
18
caudate nucleus
18
coronary artery
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
heart right ventricle
18
keratinocyte
18
mesenchymal stem cell
18
natural killer cell
18
ovary
17
foreskin fibroblast
17
muscle of trunk
17
regulatory T cell
17
thyroid gland
17
tibial artery
17
transverse colon
16
H9
16
chorionic villus
16
fibroblast of lung
16
right atrium auricular region
15
CD4-positive, alpha-beta T cell
15
GM12878
15
cardiac muscle cell
15
retinal pigment epithelial cell
15
upper lobe of left lung
14
T-helper 1 cell
14
ascending aorta
14
astrocyte
14
embryonic stem cell
14
endocrine pancreas
14
fibroblast of cardiac tissue
14
mammary gland epithelial cell
14
neutrophil
14
omental fat pad
14
skeletal muscle tissue
14
substantia nigra
14
testis
13
Peyer's patch
13
T-helper 17 cell
13
T-helper 2 cell
13
layer of hippocampus
13
neurosphere
13
pancreatic ductal cell
13
skeletal muscle myoblast
13
subcutaneous adipose tissue
12
aorta
12
excitatory neuron
12
fibroblast of dermis
12
osteoblast
12
pancreatic beta cell
12
skeletal muscle satellite cell
11
Ammon's horn
11
EndoC_BH1
11
HepG2
11
breast epithelium
11
endothelial cell of hepatic sinusoid
11
erythroblast
11
frontal cortex
11
left renal cortex interstitium
11
left renal pelvis
11
pancreatic acinar cell
11
right renal pelvis
10
bronchial epithelial cell
10
cerebellum
10
epithelial cell of prostate
10
esophagus squamous epithelium
10
left cardiac atrium
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
pancreatic alpha cell
10
prostate gland
10
skin fibroblast
10
temporal lobe
10
thoracic aorta
10
trophoblast
9
22Rv1
9
SK-N-SH
9
colonic mucosa
9
kidney tubule cell
9
mammary epithelial cell
9
pancreatic delta cell
9
parathyroid adenoma
9
putamen
9
right renal cortex interstitium
9
tongue
8
HEK293
8
IMR-90
8
NAMALWA cell
8
breast cancer cell
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
esophagus
8
esophagus muscularis mucosa
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
lymphocyte
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HAP-1
7
HL-60
7
HT-29
7
KARPAS-422 cell
7
SK-N-DZ
7
T47D
7
angular gyrus
7
chorion membrane
7
endometrium adenocarcinoma
7
eye
7
fibroblast cell line
7
right lobe of liver
7
stomach smooth muscle
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12875
6
GM19238
6
GM19239
6
GM23248
6
HCT116
6
HUES8
6
KBM-7
6
LHCN-M2
Life stage
4
embryonic
Date released
3
September, 2022
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
histone modifications
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP