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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
in vitro differentiated cells
Biosample term
128
monocyte
90
heart
86
stomach
73
brain
67
lung
67
muscle of arm
66
kidney
64
HeLa-S3
62
A549
62
small intestine
61
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
50
neural progenitor cell
48
liver
46
thymus
45
CD8-positive, alpha-beta T cell
45
right lung
43
hematopoietic multipotent progenitor cell
43
islet of Langerhans
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
39
B cell
36
left kidney
35
spinal cord
33
heart left ventricle
33
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
adipose tissue
26
MCF-7
26
regulatory T cell
25
hepatocyte
25
tibial nerve
24
body of pancreas
23
T-helper 1 cell
23
adipocyte
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
22
sigmoid colon
21
EndoC_BH1
21
subcutaneous adipose tissue
20
T-helper 17 cell
20
breast cancer cell
20
coronary artery
20
glomerular endothelial cell
20
mononuclear cell
20
pancreas
20
pancreatic ductal cell
20
pigmented layer of retina
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
natural killer cell
19
ovary
19
psoas muscle
19
right atrium auricular region
18
HFFc6
18
gastrocnemius medialis
18
heart right ventricle
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
T-helper 2 cell
17
cardiac muscle cell
17
keratinocyte
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
testis
16
GM12878
16
T cell
16
chorionic villus
16
embryonic stem cell
16
fibroblast of lung
16
layer of hippocampus
16
skeletal muscle myoblast
16
skeletal muscle tissue
16
upper lobe of left lung
15
HepG2
15
ascending aorta
15
cerebellum
15
frontal cortex
15
macrophage
15
retinal pigment epithelial cell
14
H9
14
endocrine pancreas
14
mammary gland epithelial cell
14
neutrophil
14
prostate gland
14
putamen
13
Peyer's patch
13
bronchial epithelial cell
13
fibroblast of cardiac tissue
13
mesenchymal stem cell
13
neurosphere
13
temporal lobe
12
aorta
12
endothelial cell
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
pancreatic beta cell
11
Ammon's horn
11
CD4-positive, alpha-beta T cell
11
breast epithelium
11
epithelial cell of prostate
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
kidney tubule cell
10
lymphocyte
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
neuronal stem cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
fibroblast
9
hepatic stellate cell
9
induced pluripotent stem cell
9
liposarcoma
9
parathyroid adenoma
9
tongue
9
trophoblast
9
vagina
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pancreatic delta cell
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
B-lymphoblastoid cell line
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
esophagus
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast cell line
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mature neutrophil
7
pancreatic stellate cell
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type_category!
pCHi-C
Showing 8 of 8 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP