Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
pCHi-C
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
52
HeLa-S3
47
H1-hESC
39
monocyte
37
islet of Langerhans
26
retina
20
pigmented layer of retina
19
EndoC_BH1
19
HFFc6
18
K562
18
subcutaneous adipose tissue
17
epithelial cell of proximal tubule
17
neural progenitor cell
16
glomerular endothelial cell
16
liver
16
pancreatic ductal cell
15
CD14-positive monocyte
14
macrophage
13
coronary artery
13
hepatocyte
13
regulatory T cell
12
pancreatic beta cell
12
right atrium auricular region
12
tibial nerve
11
T-helper 1 cell
11
adipose tissue
11
cardiomyocytes
11
endothelial cell
11
heart
11
pancreatic acinar cell
11
pancreatic alpha cell
11
tibial artery
10
adipocyte
10
frontal cortex
10
induced pluripotent stem cell
10
pancreatic delta cell
10
pituitary stalk
10
putamen
9
T-helper 17 cell
9
caudate nucleus
9
extended pluripotent stem (EPS) cells
9
omental fat pad
9
pancreas
9
progenitor cell of endocrine pancreas
8
GM12878
8
body of pancreas
8
cerebellum
8
fibroblast
8
glomerular visceral epithelial cell
8
heart left ventricle
8
osteoblast
8
pancreatic stellate cell
8
retinal pigment epithelial cell
7
Ammon's horn
7
B cell
7
CD8-positive, alpha-beta T cell
7
H9
7
ascending aorta
7
cardiomyocytes (cardiac muscle cell)
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphoblastoid cell line
7
stomach
7
substantia nigra
6
SGBS preadipocytes
6
T-helper 2 cell
6
amygdala
6
anterior cingulate cortex
6
brain
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
dendritic cell
6
embryonic stem cell
6
gamma-delta T cell
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
lymphocyte
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
olfactory receptor cell
5
cardiac fibroblast
5
C1 segment of cervical spinal cord
5
HUES8
5
T cell
5
T follicular helper cell
5
adrenal gland
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
endothelial cell of umbilical vein
5
gastrocnemius medialis(Muscle - Skeletal)
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
memory B cell
5
mesangial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
natural killer cell
5
pancreatic endothelial cell
5
right lobe of liver
5
skeletal muscle myoblast
5
smooth muscle cell of the coronary artery
5
spleen
4
CyT49
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
adult endothelial progenitor cell
4
bone tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
glutamatergic neuron
4
heart right ventricle
4
hepatic stellate cell
4
kidney
4
kidney glomerular epithelial cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
neutrophil
4
occipital lobe
4
ovary
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
psoas muscle
4
renal cortical epithelial cell
4
smooth muscle cell
4
spinal cord
4
uterus
4
vascular associated smooth muscle cell
4
visceral abdominal adipose tissue
3
CD4-positive helper T cell
3
HepG2
3
Jurkat
3
S-shaped body
3
U937
3
astrocyte
3
blood cell
3
brain pericyte
3
choroid plexus epithelial cell
3
enterocyte
3
globus pallidus
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
left cardiac atrium
3
medulla oblongata
3
mesenchymal stem cell
3
midbrain
3
muscle of leg
3
myofibroblast cell
3
naive B cel
3
naive regulatory T cell
3
pancreatic quiescent stellate cell
3
placenta
3
pons
3
renal pelvis
3
skeletal muscle tissue
3
skin of body
3
small intestine
3
superior temporal gyrus
3
testis
3
thyroid gland
3
transverse colon
3
trophoblast cell
2
hindlimb muscle
2
muscle of leg
2
A549
2
BJAB cell
2
GM18507
2
GM19240
2
H7-hESC
2
HAP-1
2
HCT-116 cell
2
HCT116
2
HT-29
2
IMR-90
2
KARPAS-422 cell
2
Kupffer cell
2
LNCAP
2
LoVo cell
2
MCF 10A cell
2
MCF-7
2
MDA-MB-231 cell
2
MIN6
Date released
1
June, 2020
1
May, 2021
Software used
1
abc
1
macs
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
2
AMP
RFA
2
AMP
annotation_type_category!
pCHi-C
ChIP-seq
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP