Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
89
heart
85
stomach
79
kidney
70
brain
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
adrenal gland
61
A549
58
muscle of leg
58
placenta
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
52
left lung
47
liver
47
thymus
45
monocyte
right lung
44
islet of Langerhans
42
B cell
42
hematopoietic multipotent progenitor cell
42
right kidney
40
K562
40
endothelial cell
40
renal cortex interstitium
40
renal pelvis
39
retina
36
left kidney
35
neural progenitor cell
34
spinal cord
34
spleen
33
heart left ventricle
33
hepatocyte
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
31
macrophage
30
fibroblast
27
regulatory T cell
25
adipocyte
25
smooth muscle cell
25
tibial nerve
24
MCF-7
24
body of pancreas
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
pancreatic ductal cell
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
EndoC_BH1
22
pericyte cell
22
trophoblast cell
21
CD8-positive, alpha-beta T cell
21
T cell
21
T-helper 17 cell
21
caudate nucleus
21
foreskin keratinocyte
21
glomerular endothelial cell
21
natural killer cell
21
pancreas
21
subcutaneous adipose tissue
20
coronary artery
20
mononuclear cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
19
endothelial cell of umbilical vein
19
heart right ventricle
19
right atrium auricular region
18
HFFc6
18
gastrocnemius medialis
18
keratinocyte
18
mesenchymal stem cell
18
pancreatic beta cell
18
thyroid gland
18
tibial artery
18
transverse colon
17
T-helper 2 cell
17
foreskin fibroblast
17
muscle of trunk
17
omental fat pad
17
pancreatic alpha cell
17
substantia nigra
16
astrocyte
16
chorionic villus
16
embryonic stem cell
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
induced pluripotent stem cell
16
testis
15
CD4-positive, alpha-beta T cell
15
GM12878
15
ascending aorta
15
cardiac muscle cell
15
frontal cortex
15
neutrophil
15
osteoblast
15
pancreatic acinar cell
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
skeletal muscle myoblast
15
skeletal muscle tissue
15
upper lobe of left lung
14
H9
14
endocrine pancreas
14
fibroblast of cardiac tissue
14
layer of hippocampus
14
mammary gland epithelial cell
13
Peyer's patch
13
aorta
13
cerebellum
13
excitatory neuron
13
neurosphere
13
putamen
13
skeletal muscle satellite cell
Ammon's horn
12
fibroblast of dermis
12
left renal cortex interstitium
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
prostate gland
12
temporal lobe
11
HepG2
11
breast epithelium
11
erythroblast
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
bronchial epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
kidney tubule cell
10
pancreatic stellate cell
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
10
trophoblast
9
22Rv1
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
esophagus
9
mammary epithelial cell
9
parathyroid adenoma
9
progenitor cell of endocrine pancreas
9
tongue
9
vagina
8
NAMALWA cell
8
breast cancer cell
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
lymphoblastoid cell line
8
lymphocyte
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
GM12865
7
HEK293
7
IMR-90
7
SK-N-DZ
7
T47D
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
endometrium adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast cell line
7
kidney glomerular epithelial cell
7
memory B cell
7
renal cortical epithelial cell
7
right lobe of liver
7
stomach smooth muscle
7
uterus
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CD4-positive helper T cell
6
GM06990
6
GM08714
6
GM12864
6
HUES8
Life stage
4
embryonic
Date released
3
September, 2022
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
Ammon's horn
right lung
annotation_type!
histone modifications
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP