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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
stem cell
Biosample term
52
HeLa-S3
47
H1-hESC
40
monocyte
38
islet of Langerhans
26
retina
20
pigmented layer of retina
19
EndoC_BH1
19
HFFc6
18
K562
18
neural progenitor cell
18
subcutaneous adipose tissue
17
epithelial cell of proximal tubule
17
liver
16
glomerular endothelial cell
16
pancreatic ductal cell
15
CD14-positive monocyte
15
macrophage
13
coronary artery
13
hepatocyte
13
regulatory T cell
12
adipose tissue
12
pancreatic beta cell
12
right atrium auricular region
12
tibial nerve
11
T-helper 1 cell
11
cardiomyocytes
11
endothelial cell
11
heart
11
pancreatic acinar cell
11
pancreatic alpha cell
11
tibial artery
10
adipocyte
10
frontal cortex
10
induced pluripotent stem cell
10
pancreas
10
pancreatic delta cell
10
pituitary stalk
10
putamen
9
T-helper 17 cell
9
caudate nucleus
9
extended pluripotent stem (EPS) cells
9
heart left ventricle
9
omental fat pad
9
progenitor cell of endocrine pancreas
8
Ammon's horn
8
B cell
8
CD8-positive, alpha-beta T cell
8
GM12878
8
body of pancreas
8
cardiomyocytes (cardiac muscle cell)
8
cerebellum
8
fibroblast
8
glomerular visceral epithelial cell
8
osteoblast
8
pancreatic stellate cell
8
retinal pigment epithelial cell
7
H9
7
ascending aorta
7
embryonic stem cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphoblastoid cell line
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
stomach
7
substantia nigra
6
SGBS preadipocytes
6
T-helper 2 cell
6
adrenal gland
6
amygdala
6
anterior cingulate cortex
6
brain
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
dendritic cell
6
gamma-delta T cell
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
lymphocyte
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
nucleus accumbens
6
olfactory receptor cell
6
spleen
5
cardiac fibroblast
5
C1 segment of cervical spinal cord
5
HUES8
5
T cell
5
T follicular helper cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
endothelial cell of umbilical vein
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart right ventricle
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
memory B cell
5
mesangial cell
5
natural killer cell
5
neutrophil
5
ovary
5
pancreatic endothelial cell
5
psoas muscle
5
right lobe of liver
5
skeletal muscle myoblast
5
smooth muscle cell of the coronary artery
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
adult endothelial progenitor cell
4
bone tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
glutamatergic neuron
4
hepatic stellate cell
4
kidney
4
kidney glomerular epithelial cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
mesenchymal stem cell
4
naive B cell
4
nephron progenitor
4
occipital lobe
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
renal cortical epithelial cell
4
small intestine
4
smooth muscle cell
4
spinal cord
4
thymus
4
uterus
4
vascular associated smooth muscle cell
4
visceral abdominal adipose tissue
3
CD4-positive helper T cell
3
Jurkat
3
S-shaped body
3
U937
3
aorta
3
astrocyte
3
blood cell
3
brain pericyte
3
choroid plexus epithelial cell
3
dorsolateral prefrontal cortex
3
enterocyte
3
globus pallidus
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
left cardiac atrium
3
lung
3
medulla oblongata
3
mesendoderm
3
midbrain
3
muscle of leg
3
myofibroblast cell
3
naive B cel
3
naive regulatory T cell
3
pancreatic quiescent stellate cell
3
placenta
3
pons
3
renal pelvis
3
sigmoid colon
3
skeletal muscle tissue
3
skin of body
3
superior temporal gyrus
3
testis
3
thyroid gland
3
transverse colon
3
trophoblast cell
2
hindlimb muscle
2
muscle of leg
2
A549
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
GM18507
2
GM19240
2
H7-hESC
2
HAP-1
2
HCT-116 cell
2
HCT116
2
HT-29
2
IMR-90
2
KARPAS-422 cell
Date released
1
June, 2020
1
March, 2020
1
May, 2021
Software used
1
abc
1
macs
1
nospecificsoft_customcode
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
biosample_term_name!
GM12864
annotation_type_category!
ChIP-seq
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP