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Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
129
monocyte
55
HeLa-S3
50
CD8-positive, alpha-beta T cell
50
H1-hESC
43
islet of Langerhans
41
endothelial cell
39
neural progenitor cell
38
kidney
32
fibroblast
31
heart
31
macrophage
30
hepatocyte
30
retina
26
liver
26
stomach
24
brain
24
pancreatic ductal cell
23
EndoC_BH1
22
K562
22
smooth muscle cell
21
subcutaneous adipose tissue
20
breast cancer cell
20
epithelial cell of proximal tubule
20
lung
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
19
adipocyte
19
adrenal gland
19
heart left ventricle
19
muscle of arm
19
pericyte cell
18
B cell
18
embryonic stem cell
18
muscle of leg
17
glomerular endothelial cell
17
pancreatic acinar cell
17
pancreatic beta cell
17
placenta
17
small intestine
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
large intestine
16
regulatory T cell
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
15
keratinocyte
15
muscle of back
15
pancreatic alpha cell
14
astrocyte
14
cardiac muscle cell
14
coronary artery
14
spleen
14
tibial nerve
13
H9
13
T-helper 1 cell
13
excitatory neuron
13
left lung
13
renal cortex interstitium
13
thymus
12
GM12878
12
adipose tissue
12
endothelial cell of umbilical vein
12
hematopoietic multipotent progenitor cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
pancreas
12
pancreatic delta cell
12
renal pelvis
12
substantia nigra
11
T-helper 17 cell
11
body of pancreas
11
caudate nucleus
11
erythroblast
11
lymphoblastoid cell line
11
mammary epithelial cell
11
natural killer cell
11
omental fat pad
11
osteoblast
11
retinal pigment epithelial cell
11
right atrium auricular region
11
spinal cord
10
T cell
10
foreskin fibroblast
10
gastric cancer cell
10
mesenchymal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
putamen
10
right kidney
10
right lung
10
skeletal muscle satellite cell
10
tibial artery
9
HepG2
9
MCF-7
9
Rhabdomyosarcoma
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
heart right ventricle
9
liposarcoma
9
neuronal stem cell
9
skeletal muscle myoblast
8
Ammon's horn
8
B-lymphoblastoid cell line
8
ascending aorta
8
fibroblast cell line
8
frontal cortex
8
left cardiac atrium
8
neutrophil
8
pituitary stalk
8
skeletal muscle fiber
8
testis
7
A549
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
foreskin keratinocyte
7
glomerular visceral epithelial cell
7
mature neutrophil
7
memory B cell
7
ovary
7
temporal lobe
6
CD4-positive helper T cell
6
Chondroid Chordoma
6
Jurkat
6
anterior cingulate cortex
6
aorta
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
fibroblast of lung
6
hESC cell
6
hepatic stellate cell
6
hypothalamus
6
iPSC derived cell line
6
left kidney
6
lymphocyte
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
plasma cell
6
smooth muscle cell of the coronary artery
6
type I muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HEK293
5
HUES8
5
IMR-90
5
LNCAP
5
Lymphatic Endothelial Cell
5
Non-Classical Monocyte
5
T-helper 2 cell
5
enterocyte
5
fibroblast of cardiac tissue
5
glutamatergic neuron
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mammary gland epithelial cell
5
mast cell
5
mesangial cell
5
mesendoderm
5
osteosarcoma
5
prostate cancer cell line
5
right lobe of liver
5
sigmoid colon
Life stage
1
embryonic
Date released
3
February, 2021
September, 2022
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
biosample_term_name!
SK-N-SH
month_released!
September, 2022
June, 2020
Showing 5 of 5 results
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Download
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP